Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1208 ATGTCCAACCATAATCATAATCACACATTTGCAATTTCATCTACCTTATTGATATTTTTGTTGCTAAATCTATGTCAAATCACTACAAGCCTAACACAATTTGAAGCGTTGCTAAATTGGAAACAAAGTCTACCTCCACAACCAATTCTTGATTCATGGATCATTAACAACTCAAGTTCAACACAAACACCATGTTCATGGAGAGGTATAACTTGTGATTCAAAAGGAAGTGTTACAATCATAAACTTAGCTTATACTGGACTTGAAGGTACTCTTAATCACTTAAACTTATCAGTTTTTCCAAACCTTCTTCGTCTCGATCTTAAAACAAATAATCTCACCGGTGTCATACCTGAAAACATCGGCGTTCTTTCGAAACTCCAATTTCTTGATCTTTCTACTAATTATCTAAATGGAACTTTGCCTCTTTCTATAGCTAATTTGACTCAAGTTTACGAGCTTGATGTCTCGAGAAACGATGTATCAGGTATACTAGACCCTCGTTTGTTTCCTGATGGAACTAATAAGCCCAGTTCCAGAACTGGGCTTATTGGCATCAGGAATCTTCTTTTCCAAGATACCCTTTTAGGCGGTCCACTACCGATCGAAATCGGGAATATAAAAAACTTGACTTTACTAGCTCTTGATGGAAACAATTTCTCTGGCCCAATTCCTTCATCTTTAGGAAACTGTAAACATTTAAGCATTCTTAGATTAAATGAAAATCAATTCTCTGGTCCAATTCCACCAAGTATTGGCAAATTAACCAACTTAACTGATCTTAGATTTTTCACCAACAACCTAAATGGAACTGTACCACAAGAATTTGGAAACCTTTCATCTTTGGTTGTGTTGCATCTTGCTGAGAACAATTTCATTGGTGAGTTACCACCAGAAATTTGCAAAAGTGGAAAACTTGTTAATTTCAGTTCAGCTTACAACAGTTTCACTGGTCCAATTCCAAGAAGTCTTAGAAACTGCCCTTCTTTGTATAGAGTTAGAATGGAATACAACGAGTTAACCGGTTATGCAGATCAAGATTTCGGAGTTTATCCGAATCTTACTTACATAGATTTCAGCTATAATATGGTTGAAGGTGGTTTATCTGCTAAATGGGGTTCATGCAAAAACTTGCAATCACTTAAAATGGCGGGTAATTCGGTTAGTGGAAAAATTCCAAGTGAGATTTTTCATTTGGATCAATTACAAGAGCTTGATCTATCATTTAACCGATTATCGGGAACTATTCCTTCACAAATTGGAAATTCTTCGACTTTGTCGAACTTAAATTTGAATGGAAATAGGCTTTCTGGTAAGATACCTAATGAAATTGGAAAGCTTTCGAATTTGCAAACTTTAGACCTTTCGATGAACACGTTGTTTGGTGAAATTCCAGCTCAGATAGGAGATTGTTCGAATTTGTTGAATTTGAATTTGAGTAACAATCATTTGAATGGAACAATTCCTTTCCAAATTGGAAATCTTGGTTCATTACAAGACTTTTTGGATTTGAGTTACAATTCGATTTCAGGGGCAATTCCTGGTAATATCGGTAAGCTTTCGAGTTTGATAAGCTTAAACATCTCAAACAATAATTTATCAGGTAAACTTCCTGATCAAATTAGTGGAATGTTGAGTTTGTCAAGTCTTAATCTTTCTAACAATCATTTGGAGGGTAATGTTCCTAAAGATGGCATTTTCAAATTGAACTCTTCTAATTCAATTGATTTGAGCAATAACGAAGGGCTATGTGGTAATTTCAAAGGTTTGAAACCTTGTAATGTCTCACTCATTGATCCTAATGGTGATGGGAGTAACAAAAAAAAAGTTGTGATTCCAATTGTTGCTTCATTAGGAGGTGTACTTTTTCTTTCATTGATAATTGTTGGCATAATTTTGTTATGCTATAAGAGAAAATCAAGAACTACAAGAACAAAGTCTTTATTAGATACACCAAATCCATTTTCAATTTGGTATTTCAATGGAAGAGTTGTGTACGGCGACATAATCGAAGCTACAAACAATTTCGACGACAAGCATTGCATAGGCGAAGGAGCGTTCGGGAATGTTTACAAAGCCGAATTGAAAGGTGGTCAAATATTCGCGGTGAAAAAGTTGAAATGTGATGAAGAGAATTTAGACAAAGAAAGTATAAAAACATTTGAAAGTGAAGTTGAAGCTATGACAGAAACAAGGCATAGAAACATTGTCAAGCTTTATGGATTTTGTTGTGAAGGAATGCATACATTTCTTGTTTATGAGTATATGGATAGAGGAAGTTTAGCTGATATGTTGAATGATAATAAGAAAGCATTGGAACTTGATTGGTTTAAAAGATTTGAAATTGTTAAAGGTGTTGCAAGTGCTCTTTCTTATATGCATCATGATTGTTCTCCAATTTTGATTCATAGAGATATATCAAGTAAGAATATTTTGTTATCAATGGATCTTGAAGCTCATGTTTCAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAATTCACCTATTTGGACTTCATTTGCTGGCACTTATGGCTATGCTGCTCCAGAGCTTGCATACACAATGGCAGTGACAGAGAAATGTGATGTATTCAGCTTTGGTGTTTTAGCATTTGAAATTCTAACAGGAAAACATCCTGGTGATCTTGTTTCTTACATACAAACATCTAATGATCAAAAGATAGATTTCAAAGAGATTTTAGACCCTCGCCTCGCTTCGCCTCCAAAGAACATTTTGAAGGAGTTGGCATTGGTTGCTAATTTAGCTCTTTCTTGTTTACACACAAATCCTCAATCTAGACCAACCATGAGAAGCATTGCCCAGTTGCTAGAAATGGAGACTGCATTTAACACTTGA 2856 0.3508 MSNHNHNHTFAISSTLLIFLLLNLCQITTSLTQFEALLNWKQSLPPQPILDSWIINNSSSTQTPCSWRGITCDSKGSVTIINLAYTGLEGTLNHLNLSVFPNLLRLDLKTNNLTGVIPENIGVLSKLQFLDLSTNYLNGTLPLSIANLTQVYELDVSRNDVSGILDPRLFPDGTNKPSSRTGLIGIRNLLFQDTLLGGPLPIEIGNIKNLTLLALDGNNFSGPIPSSLGNCKHLSILRLNENQFSGPIPPSIGKLTNLTDLRFFTNNLNGTVPQEFGNLSSLVVLHLAENNFIGELPPEICKSGKLVNFSSAYNSFTGPIPRSLRNCPSLYRVRMEYNELTGYADQDFGVYPNLTYIDFSYNMVEGGLSAKWGSCKNLQSLKMAGNSVSGKIPSEIFHLDQLQELDLSFNRLSGTIPSQIGNSSTLSNLNLNGNRLSGKIPNEIGKLSNLQTLDLSMNTLFGEIPAQIGDCSNLLNLNLSNNHLNGTIPFQIGNLGSLQDFLDLSYNSISGAIPGNIGKLSSLISLNISNNNLSGKLPDQISGMLSLSSLNLSNNHLEGNVPKDGIFKLNSSNSIDLSNNEGLCGNFKGLKPCNVSLIDPNGDGSNKKKVVIPIVASLGGVLFLSLIIVGIILLCYKRKSRTTRTKSLLDTPNPFSIWYFNGRVVYGDIIEATNNFDDKHCIGEGAFGNVYKAELKGGQIFAVKKLKCDEENLDKESIKTFESEVEAMTETRHRNIVKLYGFCCEGMHTFLVYEYMDRGSLADMLNDNKKALELDWFKRFEIVKGVASALSYMHHDCSPILIHRDISSKNILLSMDLEAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQTSNDQKIDFKEILDPRLASPPKNILKELALVANLALSCLHTNPQSRPTMRSIAQLLEMETAFNT* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1208 951 PRINTS Leucine-rich repeat signature 402 415 - -
Tpr4g1208 951 PRINTS Leucine-rich repeat signature 447 460 - -
Tpr4g1208 951 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 1 947 - -
Tpr4g1208 951 SUPERFAMILY RNI-like 248 583 - -
Tpr4g1208 951 Gene3D Ribonuclease Inhibitor 111 173 IPR032675 -
Tpr4g1208 951 Gene3D Phosphorylase Kinase; domain 1 639 755 - -
Tpr4g1208 951 SUPERFAMILY Protein kinase-like (PK-like) 649 945 IPR011009 -
Tpr4g1208 951 Gene3D Ribonuclease Inhibitor 464 594 IPR032675 -
Tpr4g1208 951 Gene3D Ribonuclease Inhibitor 368 463 IPR032675 -
Tpr4g1208 951 Gene3D Ribonuclease Inhibitor 269 367 IPR032675 -
Tpr4g1208 951 Gene3D Transferase(Phosphotransferase) domain 1 756 950 - -
Tpr4g1208 951 ProSiteProfiles Protein kinase domain profile. 676 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1208 951 SMART serkin_6 676 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1208 951 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Tpr4g1208 951 Gene3D Ribonuclease Inhibitor 174 268 IPR032675 -
Tpr4g1208 951 SUPERFAMILY L domain-like 60 271 - -
Tpr4g1208 951 ProSitePatterns Protein kinases ATP-binding region signature. 682 705 IPR017441 GO:0005524
Tpr4g1208 951 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 947 - -
Tpr4g1208 951 SMART LRR_typ_2 447 471 IPR003591 -
Tpr4g1208 951 SMART LRR_typ_2 520 543 IPR003591 -
Tpr4g1208 951 SMART LRR_typ_2 124 148 IPR003591 -
Tpr4g1208 951 SMART LRR_typ_2 544 569 IPR003591 -
Tpr4g1208 951 SMART LRR_typ_2 399 423 IPR003591 -
Tpr4g1208 951 SMART LRR_typ_2 279 303 IPR003591 -
Tpr4g1208 951 Pfam Leucine rich repeat 401 460 IPR001611 GO:0005515
Tpr4g1208 951 Pfam Leucine rich repeat 502 557 IPR001611 GO:0005515
Tpr4g1208 951 Pfam Protein kinase domain 677 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1208 951 ProSitePatterns Tyrosine protein kinases specific active-site signature. 801 813 IPR008266 GO:0004672|GO:0006468
Tpr4g1208 951 Gene3D Ribonuclease Inhibitor 25 110 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1208 Tpr-Chr4 11630909 11634865 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1208 15 849 Receptor kinase-like Gene Family AT4G08850 39.829 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr4g1208 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1208 - - aprc:113866080 1446.8