Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1202 ATGAAGCGTGCGAGATGCACAGGGGATTCTAGTTCTTCTAGGGTTTCACCATCTCTTGAAGCAGGAATCATCAAAAAGCTTCGGTTAGAAAATTTCATGTGTCATTCAAATCACGAAACTGAGTTCGGAAATCACGTTAATCTCATCACTGGACAAAATGGAAGTGGTAAAAGTGCAATCCTTACTGCGTTGTGTGTCGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAAGATTTCATCAAAACTGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTGATGTCATCATTGTAGAACGTAGGATATCGGAATCCACAAGCTCTATTACATTGAAAGATCACCAAGGAAAGAAAGTTTTCAGTCGGAAAGCAGATCTTCTGGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCATGTGTGATTATGAGTCAAGACAAAAGCAGAGAATTCCTGCACTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCGACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCAGTGAAATAAATACTGCACTTGGAGTAGTTGAAGAATTAGAGGCCGCTATAAGACCTGTAGAGAAGGAGCTTAAGGAGCTGCAGGTTAAAATTAAAACGATGGAACACGTCGAACAAATTTCCATACAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTTGAGGCACAAAATGTAACGATTGAAAAGTTGAAGAGTCGGGTTCCTACCTGCCAAGCTATGATAGATAAACAACTGCATCAGCTTGAAAAATTAAGTAAAAACTATTCTACGAAGAAAGCTGAAATTGCAAGTATGACGACATCAAAAGTTAAGGAAACGAAGGAAATATTAAGCCGCTCTATGTCATCGGCAAAAAAAGAAGCATATGAACTTCAGCGAGAGTGCAAATGCAAAACTAGTAACATACAGAAGTTGGTACAACAGCTCAAACAGCTTGAACAACAAATGCAGGATATTCATGAGCAACATGTGAAAAATACCCAGGCTGAAGAATCTGACATGGAGGAAAAACTCAAGGGGCTTCGAGATGAGGTTCACGATGCTAAGGCCGAATTGGATAGATTGAGAGAAGAAGAGACTACATTAATGAACAACAAAATTAGGCTAAAGGACGAAACCAAAATGATTGATGATAAGATCCGAGATCATGAAAAGAAGTATAATGAAATCATGCTTAATATTCGTAATATTAAACAACAACAAAGCAACAAGATCATGGCTTTTGGAGGAAATAAAGTGATTAATCTGTTACGTGTAATTGAAAGATGTCATCAAAGGTTTAAGATGCCTCCCATTGGTCCAATTGGTGCTCATCTGAAGTTGCTTAATGGTAATAAATGGGCGGTGGCTGTTGAACATGCCATTGGGAGAATGCTCAATTCTTTTATAGTGACTGATCACAAGGATTTTCGTCTTTTGAAACAATGTGCGAATGAAGTAAACTATGGTCATCTTCAAATTATTATTTATGATTTTTCAACCCCAAGGTTGATGATACCACACCACATGCTTCCTAATACAAACCATCCGTCAGTGTTTTCCATCTTACAATGCGAGAATCACACTGTGATGAATGTCTTAGTCGATCTGGGAAATGTTGAGAGACAAGTGCTTGTTAACGACTATAATACTGGGAAGGTTGTTGCCTTTGAAGAAAGGATCCAAAATCTGAAGGAGGTCTTCACTGTGGAAGGTTGTAAAATGTTTTCGCGAGGTCCAGTACAGACAACTCTTCCTCCAAATAAGAGTCAACGATATGGTCGTCTGAGTAGTTCTGTTGAAGATGCCATTGAGAAATTTAGTAATGATGCCTCCGATGAACAAAAAGCTGCAAATGACTATAAATGGAATAAAAAAGATGCAGAGCTCAAGCTTGAGGATCTAGACAAGAAGATGAATTCTATAAAGAGGCTTTGTTTTAATGCTGGAAAAAGTTTTAATTCGAAGAAGCTTGCTTTGGAGGAGGCAACAAATCAACAAGCTGCTGAGCGTAACTTGACACCTTTGTCCTCAGTTGATGAGATTGTTGAAGAAATTTCAGAAATAAACAAAAAAATAAAAGCAGAGGAGGTGTTGCTAGAAGGCTTTGAGCAGAGGAGGCATGAAGCAGTGGGAAAAGCAAGTGATCTTGAAGTAAAATTTGACGAATTGTGTGAATCAGTGAATACTGAAATTGCTTCCCTTGAGAAAGCTGAGAGTGAACTTATGGATATTGAAAGAGAAATCGATGCAGCAAAAAAGGCGAAGGATCATTATGATAATGTCATGAAAACCAGGGTCCTACATGATATTAAGGAGGCAGAGGAACACTATCTGGAGCTTACAAAAAGGCGTGAGGTAAATGCTGAGAAGGCTTCTGTAATTTGCTGTCAGAATGAACTTGCTACGATAGGAGGTTGTGATGGGCAAACCCCAGAGCAAATCAGTGGCCAACTAGAAGATCTAAATCGTACACTTAAGCGTGAGAGCCAAAGATACTCCGAATCTATTGATGATATGAGGATGCTATATAAAAAAAAAGAACGAAAGATTATAAGAAGGCAGCAAGTTTACAAAGCCCTTCGACAGAAATTGAGTGCTTGCCAAAGTGCTTTAGAGTTTCGGATGAGAAAGTTTCAGACTAACGCAACTAATCTCAAGCATCAGCTTTCTTGGAAATTTAATGGCCATTTGAAAAAGAAGGGGATCAGTGGAGTTATCAAAGTTGATTATGAGCAGAAGACCTTATCGATTGAGGTACAGATGCCCCAAGATGCATCAAACAGAGCCGTTCGAGACACAAGGGGGCTTTCAGGTGGAGAGCGATCTTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGTCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGACGCAGTAAGCAGAAAAATTAGCATGGACACTCTGATAGATTTTGCCGAGGCACAAGGATCCCAGTGGATATTGATCACCCCACATGATACTAGCTTGGTGAAGGCAGGGAATAGGGTAAAGAAGATGCAAATGGCAGCTCCCCGTACTTGA 3177 0.3916 MKRARCTGDSSSSRVSPSLEAGIIKKLRLENFMCHSNHETEFGNHVNLITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISESTSSITLKDHQGKKVFSRKADLLEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISSEINTALGVVEELEAAIRPVEKELKELQVKIKTMEHVEQISIQVQQLKKKLAWSWVYDVDKKLEAQNVTIEKLKSRVPTCQAMIDKQLHQLEKLSKNYSTKKAEIASMTTSKVKETKEILSRSMSSAKKEAYELQRECKCKTSNIQKLVQQLKQLEQQMQDIHEQHVKNTQAEESDMEEKLKGLRDEVHDAKAELDRLREEETTLMNNKIRLKDETKMIDDKIRDHEKKYNEIMLNIRNIKQQQSNKIMAFGGNKVINLLRVIERCHQRFKMPPIGPIGAHLKLLNGNKWAVAVEHAIGRMLNSFIVTDHKDFRLLKQCANEVNYGHLQIIIYDFSTPRLMIPHHMLPNTNHPSVFSILQCENHTVMNVLVDLGNVERQVLVNDYNTGKVVAFEERIQNLKEVFTVEGCKMFSRGPVQTTLPPNKSQRYGRLSSSVEDAIEKFSNDASDEQKAANDYKWNKKDAELKLEDLDKKMNSIKRLCFNAGKSFNSKKLALEEATNQQAAERNLTPLSSVDEIVEEISEINKKIKAEEVLLEGFEQRRHEAVGKASDLEVKFDELCESVNTEIASLEKAESELMDIEREIDAAKKAKDHYDNVMKTRVLHDIKEAEEHYLELTKRREVNAEKASVICCQNELATIGGCDGQTPEQISGQLEDLNRTLKRESQRYSESIDDMRMLYKKKERKIIRRQQVYKALRQKLSACQSALEFRMRKFQTNATNLKHQLSWKFNGHLKKKGISGVIKVDYEQKTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISMDTLIDFAEAQGSQWILITPHDTSLVKAGNRVKKMQMAAPRT* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1202 1058 Coils Coil 716 743 - -
Tpr4g1202 1058 Pfam RecF/RecN/SMC N terminal domain 24 1053 IPR003395 -
Tpr4g1202 1058 CDD ABC_SMC6_euk 24 178 - -
Tpr4g1202 1058 Gene3D - 741 1054 IPR027417 -
Tpr4g1202 1058 Coils Coil 211 231 - -
Tpr4g1202 1058 Coils Coil 655 682 - -
Tpr4g1202 1058 CDD ABC_SMC6_euk 962 1058 - -
Tpr4g1202 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1051 IPR027417 -
Tpr4g1202 1058 Coils Coil 765 799 - -
Tpr4g1202 1058 Coils Coil 285 305 - -
Tpr4g1202 1058 Coils Coil 856 876 - -
Tpr4g1202 1058 Coils Coil 424 444 - -
Tpr4g1202 1058 Gene3D - 24 296 IPR027417 -
Tpr4g1202 1058 Coils Coil 318 416 - -
Tpr4g1202 1058 SUPERFAMILY Smc hinge domain 458 609 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tpr4g1202 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 8 1057 - -
Tpr4g1202 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 8 1057 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1202 Tpr-Chr4 11542315 11567166 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1202 21 1058 Structural Maintenance of Chromosomes family AT5G07660 55.673 0.0 1148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1202 K22804 - gmx:100816916 1546.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1202 4 11542315 11567166 Tpr4g1202 4 11542315 11567166 ECH