Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1201 ATGAAACGCAGCTTCTCTGCCTTATCTCTAAACACAAACAGAGAAAACGAATCTGAGTCCAAGCTGACAAACCCAGCCATCAAACGATCCAAATGCCACCACAAACATAATGCAGCGGTCGATACAAAAGTTCTTCCAGATCAAACAAGTTCAATATGTGAAACTGAAACTCCCGAAGGTGTTTCAATATGCGAAAATGAAACTATTGAAGGTGCTTGGGTGGTGTGGGGGTTTTACAAAGACGCACATAAAAGGGAAGCAGTCAAGACACAAAAAATAAAGGAAAACTACAAAATGAAGGCAAAAGACGATGAAGGCAGTAGTGATGACTCACTTGTTCAAGCTCACTTGCGAGCCAGTTCCAAGTGTGGGAGGTGCGGAAAAGTATTCCGATCTTATCAAGCTCTTGGTGGGCACAAAGTATATTGCAAAAGTGACAACAATAGTGATTGTATGGATCAGAAACCTTTTCAGTGCCAATACTGCGACAGAGTGTTCAAGTCTGCTCAAGCACTCGGTGGACACAAGAGGGTACACTTTTCCAGTGCTAATGAATTTCGAGGTGTGTGA 570 0.4263 MKRSFSALSLNTNRENESESKLTNPAIKRSKCHHKHNAAVDTKVLPDQTSSICETETPEGVSICENETIEGAWVVWGFYKDAHKREAVKTQKIKENYKMKAKDDEGSSDDSLVQAHLRASSKCGRCGKVFRSYQALGGHKVYCKSDNNSDCMDQKPFQCQYCDRVFKSAQALGGHKRVHFSSANEFRGV* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1201 189 SMART c2h2final6 157 179 IPR013087 -
Tpr4g1201 189 MobiDBLite consensus disorder prediction 1 35 - -
Tpr4g1201 189 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 4 183 IPR044303 GO:0006355
Tpr4g1201 189 MobiDBLite consensus disorder prediction 1 20 - -
Tpr4g1201 189 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 4 183 - -
Tpr4g1201 189 SUPERFAMILY beta-beta-alpha zinc fingers 122 179 IPR036236 -
Tpr4g1201 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Tpr4g1201 189 Pfam C2H2-type zinc finger 123 143 - -
Tpr4g1201 189 Pfam C2H2-type zinc finger 157 179 - -
Tpr4g1201 189 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Tpr4g1201 189 Gene3D Classic Zinc Finger 109 179 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1201 46 189 C2H2 Transcription Factor Family AT2G45120 33.962 6.19e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g1201 zf-C2H2_6 5.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1201 - - cam:101511854 141.739