Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1200 ATGAAACCTTTACTTTTCTTTCTCATCACATTCTCCTTCCTTTGCCAAGCACAATTGCCACTAGTTTCCTCTGTCACAACTACTCTACCCTTTCAACTCATCACTCTCCTCTCAATAAAATCCTCCATCATTGACCCTCTCAATCATCTCAATGACTGGAAAATCAACTCTTCTAATTTTCCCCCTACTTTCTCAAACTCTAATTACCACCAAGACCCAATTTGGTGTTCTTGGAGAGGCATCACTTGTCACCCAAAAACAACACAAATCACTTCCCTAAACCTCTCTAACCTCAACCTTTCAGGCACAATTCCACCTCAAATCCGCTACTTAACCACCTTAATCCACTTGAACATAAGTGGAAATGACTTCAATGGAACTTTCCAAACAGGAATTTTCCAACTCATTGGACTTAGAACACTAGACATCAGCCATAACTCCTTCAGCTCAACTTTCCCACCTGGAATTGCAAAGCTAAGATTCTTAAGAATCTTCAATGCTTACAGCAACAACTTCACAGGTCCTCTTCCTGAAGAACTAATCAAACTTCCATTTCTAGAGCAGCTCAACCTTGGTGGAAGCTACTTTAGTGGGAGCATCCCACCAAGTTATGGCACTTTTAAAAGACTCAAATTCCTACAATTATCTGGTAATGCATTGGAAGGTTCACTACCTCCTCAATTAGGCCTATTATCAGAGCTACAACACTTGGAAATTGGATACAACACATTTTCCGGGACAATACCGGTTGAATTAACATTGTTGTCTAATCTCACTTACTTAGACATCTCATCAGCCAACATTTCAGGTCAACTGATTCCTGAATTAGGAAACTTAACCATACTTGAAACATTGCTTCTTTTCAAGAATCCCTTAAGTGGCAAAATCCCATCAAGCATAGGAAATTTGAAATCCCTAAAAGCTATTGATTTATCAGAAAATGAACTCACAGGCTCAATTCCACCCGAAATAACAATGCTGAAGAAACTGGAAGATTTGAGGCTCATGGATAACAAGTTGAATGGTGAAATTCCACAAGGAATTGGTGAGCTTCCAAAACTCAACATTTTCCAGATTTTCAACAACTCACTCACTGGCACACTACCACCAAAACTCGGCTCCAACGGGTTACTCCAACGACTCGATGTTTCCACAAACTCACTTCAAGGTCCAATCCCTGTGAACATTTGTAAAGGAAACAATCTTGTTAAGTTCAATCTTTTCAACAACAAATTCACCAATAATCTTCCATTATCTCTAACCAACTGCACCTCACTAACCAGAGTTCGTATCCAAAACAACAATCTCAATGGGTCAATTCCACAAACACTTACCATGCTTCCTAATTTAACCTACCTTGACCTAAGCAACAACAATTTCAACGGTGAAATTCCTCAAGAATTTGGAAACCTTCAATATTTAAACATTTCCGGAAACTCTTTCGAAAGCGAATTACCAAGCAACATTTGGAATTCAAGTAATCTACAGATTTTCTCAGCTTCATTTTCGAAAATCACCGGTCAAATTCCCAATTTCATTGGTTGCAAAAAGATTTACACAATCGAACTGCAAGGGAATTTCATCAACGGTAACATTCCTTGGAATATCCGTGATTGCGAATTACTGATTCTGTTAAATCTAAGTAGAAACAATCTCACCGGAATCATACCTTGGGAAATTGCAATTCTACCTTCAATCACCGACGTTGATCTCTCACAAAACTCACTCACCGGAATCATTCCTTCAAGGTTCAACAACTGTTCCACTCTCACGAATTTCAACGTCAGTTTCAATTTCTTAACCGGTCCAATTCCTTCCTCCGGCGTCTTCGAGAGCCTTCATCCTTCTTCCTACTCCGGCAACGAAAACCTCTGCGGTCATCTTTTAGCCAAACCCTGCGCCGCCGCCACCGGAGAAAACGAACTCGAAGCTCACCGTCAACAGCCAAAGAAAACCGCCGGCGCAATCGTTTGGATAATCGCGGCGGCGTTCGGAATCGGTCTTTTCGTTCTCGTCGCCGGTACACGTTGCTTTCATGCAAACTATAACCGGCGATTTAACGGTAACGAAACTAACTGTGAAATCGGACCGTGGAAGTTAACGGCGTTTCAACGGTTAAACTTCACGGCGGATGATGTTCTCGAGTGTGTGTCAAGATCGGATAAGATATTAGGAATGGGGTCCGCTGGAACAGTTTATAAAGCAGAAATGCCAGGTGGCGAAATCATAGCCGTTAAAAAACTCTGGTGTAAACAAAAGGAAAGTAATATAATCCGACGGAGGAGAGGAGTGTTAGCAGAAGTTGACGTATTGGGAAATGTGAGACACAGGAACATAGTGAGATTGTTAGGATGTTGCAGTAACAGGGAATGTACGATGTTGTTATATGAGTATATGGTCAATGGTAACCTTGATGATTTGTTGCATGCAAAGAATAAAGGGGGTAATATGGTAATTTGTGATTGGTATACTAGGTATAAGATAGCATTGGGTGTGGCACATGGAATTTGTTATCTTCATCATGATTGTGATCCTGTGGTTGTCCATAGAGATCTTAAACCTAGTAATATTTTATTGGACGGTGAGATGGAAGCTAGAGTTGCTGATTTTGGTGTTGCTAAGTTGATTCAAACTGATGAATCTATGTCTGTTATTGCTGGATCTTATGGTTACATTGCTCCAGAATATGCTTATACACTCCAAGTTGATGAAAAGAGTGACATTTACAGCTATGGAGTGGTGTTAATGGAAATTTTAAGTGGAAAACGATCAGTGGATCAAGAATTTGGTGATGGAAACAGTATTGTGGATTGGGTTAGGTCCAAAATAAAGACCAAAGATGGAATTGAAGGTATATTGGACAAGAATGCAGCGGCAGGGTGTAGCACAGTAAGAGAAGAAATGATACAAATACTTAGAATTGCATTGCTATGTACAAGTCGAAATCCAGCTGATAGACCTTCAATGAGAGATGTTGTGTTGATGCTTCAAGAGGCTAAACCTAAGAGAAAATTGTTTGATAGTGTTGTTTTAGGTCGATGTGCTAATGACAATGTTGATGTTGGTGAAGATGGTGGTGGTGATATTCCTTTGGCTCAAAAACCAATTATCAATTAA 3117 0.4007 MKPLLFFLITFSFLCQAQLPLVSSVTTTLPFQLITLLSIKSSIIDPLNHLNDWKINSSNFPPTFSNSNYHQDPIWCSWRGITCHPKTTQITSLNLSNLNLSGTIPPQIRYLTTLIHLNISGNDFNGTFQTGIFQLIGLRTLDISHNSFSSTFPPGIAKLRFLRIFNAYSNNFTGPLPEELIKLPFLEQLNLGGSYFSGSIPPSYGTFKRLKFLQLSGNALEGSLPPQLGLLSELQHLEIGYNTFSGTIPVELTLLSNLTYLDISSANISGQLIPELGNLTILETLLLFKNPLSGKIPSSIGNLKSLKAIDLSENELTGSIPPEITMLKKLEDLRLMDNKLNGEIPQGIGELPKLNIFQIFNNSLTGTLPPKLGSNGLLQRLDVSTNSLQGPIPVNICKGNNLVKFNLFNNKFTNNLPLSLTNCTSLTRVRIQNNNLNGSIPQTLTMLPNLTYLDLSNNNFNGEIPQEFGNLQYLNISGNSFESELPSNIWNSSNLQIFSASFSKITGQIPNFIGCKKIYTIELQGNFINGNIPWNIRDCELLILLNLSRNNLTGIIPWEIAILPSITDVDLSQNSLTGIIPSRFNNCSTLTNFNVSFNFLTGPIPSSGVFESLHPSSYSGNENLCGHLLAKPCAAATGENELEAHRQQPKKTAGAIVWIIAAAFGIGLFVLVAGTRCFHANYNRRFNGNETNCEIGPWKLTAFQRLNFTADDVLECVSRSDKILGMGSAGTVYKAEMPGGEIIAVKKLWCKQKESNIIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMVNGNLDDLLHAKNKGGNMVICDWYTRYKIALGVAHGICYLHHDCDPVVVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDQEFGDGNSIVDWVRSKIKTKDGIEGILDKNAAAGCSTVREEMIQILRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLFDSVVLGRCANDNVDVGEDGGGDIPLAQKPIIN* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1200 1038 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 1012 - -
Tpr4g1200 1038 SMART serkin_6 718 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1200 1038 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 4 1012 - -
Tpr4g1200 1038 ProSiteProfiles Protein kinase domain profile. 718 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1200 1038 Gene3D Ribonuclease Inhibitor 396 633 IPR032675 -
Tpr4g1200 1038 Pfam Protein kinase domain 721 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1200 1038 Gene3D Phosphorylase Kinase; domain 1 693 798 - -
Tpr4g1200 1038 SUPERFAMILY RNI-like 92 413 - -
Tpr4g1200 1038 Gene3D Transferase(Phosphotransferase) domain 1 799 1011 - -
Tpr4g1200 1038 SUPERFAMILY L domain-like 320 625 - -
Tpr4g1200 1038 SUPERFAMILY Protein kinase-like (PK-like) 721 996 IPR011009 -
Tpr4g1200 1038 SMART LRR_typ_2 327 351 IPR003591 -
Tpr4g1200 1038 SMART LRR_typ_2 447 470 IPR003591 -
Tpr4g1200 1038 SMART LRR_typ_2 563 586 IPR003591 -
Tpr4g1200 1038 SMART LRR_typ_2 207 231 IPR003591 -
Tpr4g1200 1038 SMART LRR_typ_2 303 326 IPR003591 -
Tpr4g1200 1038 SMART LRR_typ_2 135 159 IPR003591 -
Tpr4g1200 1038 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Tpr4g1200 1038 Gene3D Ribonuclease Inhibitor 291 395 IPR032675 -
Tpr4g1200 1038 Pfam Leucine rich repeat 425 480 IPR001611 GO:0005515
Tpr4g1200 1038 Gene3D Ribonuclease Inhibitor 193 290 IPR032675 -
Tpr4g1200 1038 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1200 Tpr-Chr4 11514784 11521013 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1200 3 1004 Receptor kinase-like Gene Family AT1G08590 42.913 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr4g1200 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1200 - - gmx:100813189 1563.51