Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1194 ATGGACGCTCTCAATTCCAATCCTCCATGCGATCTCCCTCCCCACAACACCACCACATCAGACTACAACAACCAATCCCAAACCCTAATTCCCGAAAACGGCATCAACAACGGAAACCAATCCCATAACGGTCAAACCACTATCACCGTCACAGATAACAACGATTCACGTCCACATATTCACAATCCCCTTCTCTCCGACAATGGTTTAACTGCCAATACCCGAAGCGGAACTGATAAGGATCAATCAGGTGGTGAAGAAGAGACAACGAGCAAACGACGTCGTCGTAGTCGGTGGGATCCACAGCCAGATTCAAACGATCAGACTAGCGGCGAAACGGGCGGGACGAAGAAAAGGAAATCTCGTTGGGCTGATGATGAACCGAAACCGGTAATTCAACTTCCTGATTTTATGGGTGGTATTGAATTTGATCCTGAAATTCAAGCTTTGAATAGTAGATTACTTGAAATTAGTAGAATGTTGCAATCTGGTTTACCTTTAGATGATCGTCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAATATGGGTATTAGAATTAATACTAGAGAGTATCGTGCTCGCGAGAGATTGCAGAAAGAAAGACAAGAAATTATATCTCAGATTATTAAGAAAAACCCGGCTTTTAAGCCTCCTGCTGATTATAGACCACCAAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATATCCGGGTTATAATTTCATTGGGCTTATTATTGGTCCTAGGGGTAATACTCAGAAACGGATGGAGAAGGAGACTGGCGCTAAGATTGTGATTCGAGGTAAAGGGTCGGTGAAAGAAGGTAGGTTGCAACAGAAGAGGGATTTGAAGCCTGATCCTTCGGAGAATGAAGATTTGCATGTTTTGGTTGAGGCGGATACGGCTGATGCGCTTGAAGCTGCTGCTGGTATGGTTGAGAAGCTCTTGCAGCCTGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCTTTGAATGGGACAATTAGGGATGAGGAGTATTGTAGGTTGTGTGGCGAACCTGGTCATCGCCAATATGCTTGTCCTACGAGGACTTCAACATTTAAGAGTGAAGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTGAAGGGTGCTACAGGGAAGAAGATGGATGATGAGTATCAGAATTTTCTGGCTGAGTTGGGCGGTACAGTTCCTGAATCTGCAATAAAGCAAACTAGTACTTTGGCAATTGGGTCGGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTAGTCCGAGTACTCCAACACCTGGGTTAGGGGCTGGTGCAGCTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATCTGCCACCCACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCTAAAGTCATTAAAGATCGTATGACAGGATTGAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTCGCCATGAATGGTTATCGCCTTGACGGTCGAACCATTGCAGTGAGAGTAGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCAGCATCGGCTGTGCCCACTTATCCTGTTCAAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATACTGGCGGTGGTCCCCTTGGGAGTGCTCCTCCTGGGAGTTATGGCGGTACCCCAGTTCCGTGGGGACCTCCTATGCCTCCTCCATACAATCCTTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCTCCTATGCATGGTCAACCCATGCCTCCTTATGGTGTTCAATATCCTCCCATGCCAACAGGCCCCCCTGGTGCCACGTCCCAGCCAGCGGCTTCTGGTGAAATGCAGCAGAATTACCCTCCTGGAGTGCAGTCTGATAATAATACATCTACTCAGTCTCTACCGACCAACATGTATGGGAGCACAATACCTTCAATGCCACCTGCAGCTCCTCCATCATATCCTGCATCTTATGGATATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCCCCTCCTACTTCAGACCAACCCAGCATTGCTAATGCGCCTTGGGCCAGTAATCATTCGGTACCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCACCTATGCCTCCTAACTCATCGGCGGAGAAGACATCATATGGAGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2328 0.4661 MDALNSNPPCDLPPHNTTTSDYNNQSQTLIPENGINNGNQSHNGQTTITVTDNNDSRPHIHNPLLSDNGLTANTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQTSGETGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKQTSTLAIGSGNSGSNPPWANNSSPSTPTPGLGAGAAKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLDGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQSQPLGAYPSQQYTGGGPLGSAPPGSYGGTPVPWGPPMPPPYNPYAPPPPGSTMYPPMHGQPMPPYGVQYPPMPTGPPGATSQPAASGEMQQNYPPGVQSDNNTSTQSLPTNMYGSTIPSMPPAAPPSYPASYGYPPPPYYNAVPPPPPPPTSDQPSIANAPWASNHSVPPPPSSADQSQSIGNAPMPPNSSAEKTSYGADSEYEKFMAEMK* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1194 775 MobiDBLite consensus disorder prediction 10 25 - -
Tpr4g1194 775 MobiDBLite consensus disorder prediction 720 761 - -
Tpr4g1194 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 543 IPR000504 GO:0003723
Tpr4g1194 775 ProSiteProfiles Type-1 KH domain profile. 245 317 - -
Tpr4g1194 775 SMART kh_6 230 322 IPR004087 GO:0003676
Tpr4g1194 775 Gene3D - 432 547 IPR012677 -
Tpr4g1194 775 MobiDBLite consensus disorder prediction 63 79 - -
Tpr4g1194 775 MobiDBLite consensus disorder prediction 708 775 - -
Tpr4g1194 775 MobiDBLite consensus disorder prediction 431 451 - -
Tpr4g1194 775 MobiDBLite consensus disorder prediction 80 102 - -
Tpr4g1194 775 SUPERFAMILY RNA-binding domain, RBD 460 553 IPR035979 GO:0003676
Tpr4g1194 775 Pfam Splicing factor 1 helix-hairpin domain 119 226 IPR032570 -
Tpr4g1194 775 MobiDBLite consensus disorder prediction 431 457 - -
Tpr4g1194 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 536 IPR000504 GO:0003723
Tpr4g1194 775 MobiDBLite consensus disorder prediction 113 129 - -
Tpr4g1194 775 PANTHER RNA-BINDING PROTEIN RELATED 43 775 IPR045071 -
Tpr4g1194 775 ProSiteProfiles Zinc finger CCHC-type profile. 378 392 IPR001878 GO:0003676|GO:0008270
Tpr4g1194 775 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 43 775 - -
Tpr4g1194 775 SUPERFAMILY Retrovirus zinc finger-like domains 348 394 IPR036875 GO:0003676|GO:0008270
Tpr4g1194 775 Gene3D - 351 403 - -
Tpr4g1194 775 MobiDBLite consensus disorder prediction 1 25 - -
Tpr4g1194 775 SMART rrm1_1 466 539 IPR000504 GO:0003723
Tpr4g1194 775 MobiDBLite consensus disorder prediction 63 130 - -
Tpr4g1194 775 Gene3D - 144 221 - -
Tpr4g1194 775 SMART c2hcfinal6 377 393 IPR001878 GO:0003676|GO:0008270
Tpr4g1194 775 SMART c2hcfinal6 351 367 IPR001878 GO:0003676|GO:0008270
Tpr4g1194 775 CDD SF1_like-KH 231 347 - -
Tpr4g1194 775 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 230 356 IPR036612 GO:0003723
Tpr4g1194 775 MobiDBLite consensus disorder prediction 275 295 - -
Tpr4g1194 775 Pfam KH domain 245 293 IPR004088 GO:0003723
Tpr4g1194 775 Gene3D K Homology domain, type 1 222 350 IPR036612 GO:0003723
Tpr4g1194 775 ProSiteProfiles Zinc finger CCHC-type profile. 352 366 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1194 Tpr-Chr4 11448387 11452527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1194 465 670 Eukaryotic Initiation Factors Gene Family AT3G16380 26.761 1.94e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1194 K13095 - gmx:100800982 1093.57