Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1186 ATGGACATGAATTCAAATAATACTCCCGTTCTCACGGATACCGCTCCAATAACAAATTCAAGGCTGCATGTGCATTCCAATTTGTTGCCTTATTCACATACCGGTGCAACCTTTCCTCACGGTATGCTATTGAATATCCCAAGGAAGAAGACGGGAATTCTTGAAGATGTTTTTTCTTGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCGAAGAATAAAACAAAGGATGTTAATCACGGATTTGCATCATCTGAAGCCGATCCTTATTTCAACTGGCTGCTAAAGTATCCATCGGCACTTACATCTTTTGATCAAATTACGAACTACGCAAAAGGCAAAAGAATTGCATTGTTTTTGGACTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCAGATAATATGCGTGCTGCTGTTAAAAAAGTGGCAGAGTATTTCCCAACAGCGATAATTAGCGGAAGAAGTCGCGACAAGGTACATGAATTTGTAGGACTAACCGAACTCTATTATGCTGGCAGCCATGGAATGGACATCATTGGCCCTGTTAGACAATCTCTATCCGTATCACATAACCACCCTAATTGCATCATTAAGTCTACTGACAAGCAGGGGAAGAAGGTGAATTTATTCCAACCTGCTGCTGAATTCCTGCCAATGATTAATGAGGTGCTTAAGTCTCTTATTGAGTGTACAAAAGACATCAAAGGATCAAAAGTTGAGAACAATAAATTTTGTGTATCTGTACATTACCGCAATGTAGACGAGAAGAGTTGGAGTTTGGTGGCACAACGAGTTAATGATGTTCTTAAGGGCTTTCCACGTTTGCGTTTAACTCATGGTCGCAAGGTTTTAGAGGTCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACATTTTTACTCGAGTCACTTGGACTTAACAATTGTGATGATGTGCTTCCTATATACATTGGCGATGATCGGACGGATGAAGATGCATTTAAGGTTCTGAGAGAGGGAAATAAAGGTTATGGGATTTTAGTGTCTTCAGCACCGAAAGAAAGTAACGCAAGTTACTCTCTTCGTGATCCGTTGGAGGTCATGGAATTTCTTAAGTCACTCGTGTTATGGAAGCAAAGTCCCTTTAAAAGCCATATATAG 1170 0.406 MDMNSNNTPVLTDTAPITNSRLHVHSNLLPYSHTGATFPHGMLLNIPRKKTGILEDVFSCGWLDAMKSSSPPPKNKTKDVNHGFASSEADPYFNWLLKYPSALTSFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSLSVSHNHPNCIIKSTDKQGKKVNLFQPAAEFLPMINEVLKSLIECTKDIKGSKVENNKFCVSVHYRNVDEKSWSLVAQRVNDVLKGFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNASYSLRDPLEVMEFLKSLVLWKQSPFKSHI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1186 389 Gene3D - 118 208 IPR023214 -
Tpr4g1186 389 Gene3D - 222 387 IPR023214 -
Tpr4g1186 389 SUPERFAMILY HAD-like 119 380 IPR036412 -
Tpr4g1186 389 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE A 1 383 - -
Tpr4g1186 389 CDD HAD_TPP 119 372 - -
Tpr4g1186 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 383 IPR044651 GO:0004805|GO:0005992
Tpr4g1186 389 TIGRFAM T6PP: trehalose-phosphatase 115 378 IPR003337 GO:0003824|GO:0005992
Tpr4g1186 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 120 341 IPR006379 -
Tpr4g1186 389 Pfam Trehalose-phosphatase 121 367 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1186 Tpr-Chr4 11357918 11363676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1186 112 377 Trehalose Biosynthesis Gene Families AT1G70290 26.502 2.67e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1186 K01087 - gmx:100819495 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1186 4 11357918 11363676 Tpr4g1186 4 11357918 11363676 ECH