Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1185 ATGGCTCGTGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCGGTTCATAGACAAGTTACTTTTTGTAAGCGCCGAGCAGGGCTTCTGAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAAGCATGCAAGGGCTTATAGAGAAGTACTTGAAGTTCACACGTGGGACTCAACCTGAAGCTATCACTGAACCACATCCTCTTGTAATGGATGCTAAAGAGGAAGCCAATGTGATAAAACAAGAGATCGAAACATTGCAAAAGGGCATCCGGTATTTGTTTGGAGGAGGATTAGGTACAATGGCAATGGATGAATTACAAGTTCTAGAGAAGAATCTTGAAATCTGGATGTATCATGTTCGGTCAATGAAGATGAACATTATGTCAGAAGAAATTCAAGCTTTGAGAGATAAGGTGTTGGAGAATACTTCCGTCACTAACTTTGTTCCATTAGTTGATACCTCGTACCCACTAATTATACAAGATGGGATTTTTCAGCTCTAG 564 0.4238 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGSMQGLIEKYLKFTRGTQPEAITEPHPLVMDAKEEANVIKQEIETLQKGIRYLFGGGLGTMAMDELQVLEKNLEIWMYHVRSMKMNIMSEEIQALRDKVLENTSVTNFVPLVDTSYPLIIQDGIFQL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1185 187 Coils Coil 89 109 - -
Tpr4g1185 187 Pfam K-box region 92 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr4g1185 187 ProSiteProfiles K-box domain profile. 89 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr4g1185 187 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tpr4g1185 187 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr4g1185 187 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 158 - -
Tpr4g1185 187 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g1185 187 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 158 - -
Tpr4g1185 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Tpr4g1185 187 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Tpr4g1185 187 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Tpr4g1185 187 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr4g1185 187 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr4g1185 187 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr4g1185 187 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1185 Tpr-Chr4 11345472 11352792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1185 1 187 MADS-box Gene Family AT1G71692 56.872 4.50e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr4g1185 K-box 3.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1185 - - gmx:100783345 287.345