Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1183 ATGACAATCATCATAGGAAAGATATTGCTAACACTATTATTGTTATCATCAATTTTCTCAATAGCCACTTCATCAAAAAGAAGATCAAGATCTTCAAACAACATAGATTATTGGTGTAACCAAACCCCTCACCCAGAACCATGCAAATACTACACAAAACAAACCCATTACTATCACAAAAAAATCAAACACAAATCAAAATTCCGCGAAATTCTCATTCATTTAGCATTGGAAAGAGCCGTTGTAATGCGAAACATCGCACATCAATTCGGACAAAACAATTGGCTCACCAACAAAAGGAAAAAATCCGTGTCACGTGATTGTTTAAAACTTTACGACAACACAGTTTTCCATCTCAACCGTACATTTTCAGACCTGCACGTCAAAAAAAGATGTTCGTCATTCGACGCACAAACATGGCTTAGCACGGCTTATACTAACATCCAAACATGTCAAAATGGCGCATTGGAATTAAACATTCCAAAATTCATTGTACCAATTATGAAAGTAAACATGACGGAGATTATAAGCAACAGTTTATTCGTCAATTGGGAATTCGTTAAACGTGATGGCCTTGTTCACTACACGGATGATGTCACCGAAGAGGCATTTCCAAGATGGTTTTCAGTACGAGAGAGGAAACTATTGGAATCTTCTAGAGTTATTAAAGCTCATCTTGTTGTTGCGAAAGATGGTTCGGGGCATTTTAAGAAAGTTCAAGATGCTATAAATGCGGCCGGACGCAGAAAGTTTAAGACGAGATTTGTTATTCGTGTGAAGAGAGGTGTTTATAGAGAGAATATTGTAGTTGGGAAGATGAATGATAATATTATGTTGGTTGGTGATGGGAGTAGGACTACGATTATAACAAGTAATAGAAATGTTCAAGCTGGTTTTACTACCTATAGTTCTGCTACTGCAGGAATTGATGGTCTTCACTTCATTGCACGTGACATAACTTTTGAAAATACGGCGGGACCTCGTCGAGGTCAAGCAGTGGCACTTCGATCAGCTTCTGACCTTTCTGTCTTCTATCGTTGTGCTTTCAAAGGCTATCAAGATACCCTTATGGTTCACGCGCAACGTCAATTTTACAAAGAATGTTACATCTATGGTACCGTTGACTTCATCTTCGGCAATGCAGCAGTAGTTTTCCAAAATTGCATAATTCTTGTAAGAAGACCATTAAACGGCCAAGCAAACATGATCACAGCCCAAGGTCGAGACGACCCATTTCAAAACACCGGAATATCAATTCACAATTCTCAGATTAGGGCTGCTCCCGATTTCAAGCCCGTCGTGTCGAAATTCAAAACCTTTATGGGCCGGCCTTGGCAAAGATACTCTAGAGTTGTGGTCATGAAATCATTCATGGATAATTTGGTAAGCCCAATGGGTTGGTCTCCATGGGGAGGTACAAATTTTGCTCAAAGCACTCTATTTTATGGGGAGTATAAGAACTTTGGGCCGGGCTCATCAACAAGAAATAGAGTAAGATGGCCCGGTTATCATGTAATGAGCAGCCCAGCCCAAGCATCACAATTCACTGTTGCTAATCTCCTTGCTGGTGCCACGTGGCTACCATCCACTGGTGTACCATTCACTTCTGGCCTTTAA 1617 0.402 MTIIIGKILLTLLLLSSIFSIATSSKRRSRSSNNIDYWCNQTPHPEPCKYYTKQTHYYHKKIKHKSKFREILIHLALERAVVMRNIAHQFGQNNWLTNKRKKSVSRDCLKLYDNTVFHLNRTFSDLHVKKRCSSFDAQTWLSTAYTNIQTCQNGALELNIPKFIVPIMKVNMTEIISNSLFVNWEFVKRDGLVHYTDDVTEEAFPRWFSVRERKLLESSRVIKAHLVVAKDGSGHFKKVQDAINAAGRRKFKTRFVIRVKRGVYRENIVVGKMNDNIMLVGDGSRTTIITSNRNVQAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYRCAFKGYQDTLMVHAQRQFYKECYIYGTVDFIFGNAAVVFQNCIILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDFKPVVSKFKTFMGRPWQRYSRVVVMKSFMDNLVSPMGWSPWGGTNFAQSTLFYGEYKNFGPGSSTRNRVRWPGYHVMSSPAQASQFTVANLLAGATWLPSTGVPFTSGL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1183 538 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Tpr4g1183 538 PANTHER PECTINESTERASE 5 537 - -
Tpr4g1183 538 Gene3D - 219 538 IPR012334 -
Tpr4g1183 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 184 IPR035513 -
Tpr4g1183 538 PANTHER PECTINESTERASE 5 537 - -
Tpr4g1183 538 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 182 IPR006501 GO:0004857
Tpr4g1183 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 182 IPR035513 -
Tpr4g1183 538 SUPERFAMILY Pectin lyase-like 221 537 IPR011050 -
Tpr4g1183 538 CDD PMEI-like_3 38 183 - -
Tpr4g1183 538 Pfam Plant invertase/pectin methylesterase inhibitor 34 180 IPR006501 GO:0004857
Tpr4g1183 538 Pfam Pectinesterase 226 523 IPR000070 GO:0030599|GO:0042545
Tpr4g1183 538 SMART PMEI_2 30 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1183 Tpr-Chr4 11300862 11303233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1183 32 538 Carbohydrate Esterase AT3G47400 57.336 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1183 K01051 - gmx:100807908 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1183 4 11300862 11303233 Tpr4g1183 4 11300862 11303233 ECH