Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1163 ATGGTTGTCAACGAAAGACCAAGTAAGAGAATGAAACGAAGAGTCACTGCCGATCTTTATGATTTTCTCACTTTCCCTCCCGCCAGTGACAAATCCACCGCTGTTCCTTTTCGTACCGATGTTCATCGGTTTGTTTCTGAACATGCTCGTGTTACTTTTCCTCCTTCTCTTTTTTCGTCTCTGATGACGTGGCAGATCCTGTTTCGTGTTGGAGATGTTGGTGATGGTTCTGATCTTTCTACTGCCATGGTTGCTCTTGACATTGTTGAAGAGGATGTAACTCGGTCTCGTAGTTCGGTTTATTGTGACCAGTGCCGAGTTGTTGGATGGAGTGCTCATCCTGTATGTGGAAAGCGATATCACTTCATAATAAGGTCTGCAAGTGATTCTATCGAATCATACCAAAGACCTTGTTCAAAATGTGAAACTCCTGTCCCATTATCTGAAGCAAGGTGTAAGGCGTGCAATTTTGACATCTCCATTGATGATCTTGAGGATTGTGTGTATCTTCAAATGGAAGAGAACACTCATCTTCTGCATGGAGTTATCCACTCCAATGGTTATGGTCACTTGCTTACTCTTAATGGAAAAGAAGGTGGCTCGATGCTTCTCTCTGGATCTGATATTATGGGATTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAATTTGGTCTGGATTATCGTTTGCTTCATTCAATTGCAAAAGGGCATTCATGGTATGGCAATTGGGGTTATGAATTTGGGACTGGCAGCTATGCTCTTACCAAAGATGCTTACAATAAGGCAGTTGATAGCTTGTCCAATATGCCCTTGTCCTCGTTTTTATTCCAGGACCGAGGACCTCGACACCATGTGCAATCCATTATTTCTCTTTACCAGTCTTTGGCAGGAACTGAACTTCTCACAATGAAAGACCTCTTCTCCTTTTTGTTGGAATTGGTTCATAAATTTCGTAAGCCCAGGAGTGCAAAGACTGCTAAACAGCATGGATATGCCAGTCCCTGTAATTTATTATGTGCATGGACTAGAAAAGATGTTGAAGATGTGCAACATGCTTTAATCAAGGTGTTGCTAGTATCTGGTGCTTGTAATGAGGCCAAATGGGTGACAAGCCAAACTCTCAAGGGGGCAGTAAGTAGGCTTGGATCTCCAGAGTTACTAGACTACTGTCTTAAGCATTTGCAAGGGAAAATAGCCGCAAATGGATTGGTAGTTTGTTCGCGATGCAATCCCACATCCAGTGCTATTGAATTCAGATTGGGACATTTGACTAATGGATTTAGCTCAAATTCAGCGTACCCTTCAGAAGAGCAAGTGATTTCTGATTTGACACTCCTATTTAATTCACTTATTCACCCTGAAAAAATGATCAAATACAGACCTAAGATTATTAGGAAAACAGTGTGTGATTCAGCCAGAAAGCTTCTTGACTGTAAGCAGTTTATGAAGGATTACAAAATTGATCAAGTGACCACAGAACTGCCTTCAGCTATTAAGCTCTGGTGTCATGTGGAGCTTTCTGATCAACCTAAAGAAGACCAGCCATCACCACCGCCAGAGCTAATTGTTTTGCCTTTGGATGCTACTGTTGTTGACCTCAAGAATGAAGCCACTAAAGCTTTCCAATCGGTATATGCAATGTACAAAAAGTTTCAAGCTCTAGAACTTTTAGGTTTTGGTTCAATCAAGGACTCACTAACTGTAAAATTCCTTCTCGGAACATCTGGATCAGTTGAAATTCTAGGAAAATGCCCATCCAAACATGGCTTAAGCCGATTCCGAAAGGAGCGTGGTACTGAAGAATGGAAAGTTGATTGCACATGTGGTGCTAAGGATGATGACGGAGAAAAAATGTTAGCATGTGATACCTGTGGCATCTGGCAGCATACCAGATGTGCTGGAATTGGTAGTTCTGATGACGGCTTGCCTTCCAAGTTTGTATGTATGAAATGTGTTGAGGCTTGTAAATTGAACGCATCCTGCAGAAATGAAAATGCAGCTGCTTGTAATATAAATGTGAATTTTGGTGTACAATGA 2070 0.4155 MVVNERPSKRMKRRVTADLYDFLTFPPASDKSTAVPFRTDVHRFVSEHARVTFPPSLFSSLMTWQILFRVGDVGDGSDLSTAMVALDIVEEDVTRSRSSVYCDQCRVVGWSAHPVCGKRYHFIIRSASDSIESYQRPCSKCETPVPLSEARCKACNFDISIDDLEDCVYLQMEENTHLLHGVIHSNGYGHLLTLNGKEGGSMLLSGSDIMGFWDRLCAAISVRKVSVMDLSKKFGLDYRLLHSIAKGHSWYGNWGYEFGTGSYALTKDAYNKAVDSLSNMPLSSFLFQDRGPRHHVQSIISLYQSLAGTELLTMKDLFSFLLELVHKFRKPRSAKTAKQHGYASPCNLLCAWTRKDVEDVQHALIKVLLVSGACNEAKWVTSQTLKGAVSRLGSPELLDYCLKHLQGKIAANGLVVCSRCNPTSSAIEFRLGHLTNGFSSNSAYPSEEQVISDLTLLFNSLIHPEKMIKYRPKIIRKTVCDSARKLLDCKQFMKDYKIDQVTTELPSAIKLWCHVELSDQPKEDQPSPPPELIVLPLDATVVDLKNEATKAFQSVYAMYKKFQALELLGFGSIKDSLTVKFLLGTSGSVEILGKCPSKHGLSRFRKERGTEEWKVDCTCGAKDDDGEKMLACDTCGIWQHTRCAGIGSSDDGLPSKFVCMKCVEACKLNASCRNENAAACNINVNFGVQ* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1163 689 Pfam PHD-finger 617 664 IPR019787 -
Tpr4g1163 689 ProSitePatterns Zinc finger PHD-type signature. 617 662 IPR019786 -
Tpr4g1163 689 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 677 - -
Tpr4g1163 689 SMART PHD_3 616 663 IPR001965 -
Tpr4g1163 689 CDD PHD_MMD1_like 616 662 - -
Tpr4g1163 689 SUPERFAMILY FYVE/PHD zinc finger 610 665 IPR011011 -
Tpr4g1163 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 668 IPR013083 -
Tpr4g1163 689 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1163 Tpr-Chr4 11124745 11128418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1163 84 662 PHD Transcription Factor Family AT5G22260 29.612 9.65e-81 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr4g1163 PHD 8.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1163 - - mtr:MTR_4g035550 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1163 4 11124745 11128418 Tpr4g1163 4 11124745 11128418 ECH