Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1154 ATGACTCCAGTTAATTTGGCAGGACAATTTGGTGACACAACATACACCAAAGTTTTTGTTGGAGGGTTAGCTTGGGAAACTCAAAAGGAAACTATGAAGAAATATTTTGAACAATTTGGTGAGATCTTGGAAGCTGTTGTTATCACTGACAAAGCCACTGGAAGATCCAAAGGCTATGGTTTTGTTACTTTTCGTGAGCCTGATGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCAATCATTGATGGCAGGAGAGCTAATTGCAATCTTGCTTCTTTGGGTGTCCAAAGATCTAAGCCTTCAACACCAAAGCATGGAGGAGGAGGGAGGAACTTTAGGGTAATGGGTTCTTACCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCACCGGATTACAGTTACCCTACGAGCTACTATGGTATGTACGGTGGAGCAGCAGCACAGTACCCTGTTTATGGAAATGGACCAGCTGGAGGAATGATGACTGGTGGTGCAGCAGCAGCTGCAGCATACTATCCATATCTTCAGTATGGCGAAGGAACTGGCGGTGCAACAACCGGCGGCTACACTTCCGGTCAAGGTTATGGCGTTAACTACCCACCTCAAGTGTTTCAGTATTCTCCAATTGCTTCAACTGGTGGTTATGCTGCTCAGCATTATGGAACACCCATTTCTCTTGCACCTTCCCCCGCTGCCCTACCATCAGGCGTGACAATGGCTCTACAAGCTCCAATTCCTCATCGTTAG 825 0.4642 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSYQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGMYGGAAAQYPVYGNGPAGGMMTGGAAAAAAYYPYLQYGEGTGGATTGGYTSGQGYGVNYPPQVFQYSPIASTGGYAAQHYGTPISLAPSPAALPSGVTMALQAPIPHR* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1154 274 SMART rrm1_1 17 89 IPR000504 GO:0003723
Tpr4g1154 274 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Tpr4g1154 274 Gene3D - 11 129 IPR012677 -
Tpr4g1154 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Tpr4g1154 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Tpr4g1154 274 PANTHER OS01G0876800 PROTEIN 1 269 - -
Tpr4g1154 274 PANTHER BOULE-RELATED 1 269 IPR037366 GO:0003729
Tpr4g1154 274 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1154 Tpr-Chr4 11036401 11047754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1154 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 1.11e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1154 - - adu:107477578 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1154 4 11036401 11047754 Tpr4g1154 4 11036401 11047754 ECH