Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1150 ATGGAGGCAAGCACCCAAGAGTCTGTTGATTCCACAGAAGATTTTAATAATTATAGTCCCATCACTGTGATGATTTCGGACCCACATGCGTTCGATTGTTGCAATTGCTGTCAATCCTTGACCATTCCCGTCTTTCAGTGTGTTAATGGTCATATTGTTTGCTCCATCTGCTATAATCAACTTCAACAAAAGTGTCTCCAATGCTCGAATTGCTTAATACGTTGTAGAGCCTTTGAGAATCTATTGAAATCTATCGAAATGTTTTGCTCGAACGAAAAATATGGGTGCAAGGAGAGGATAAGTTACATTAGATATAAGGAGCATGTAGAAGAATGCATTCATATGCCATGTTACTGCCCCCTTTCAAGTTGTGACTTTGTTGGCTCATCAGAAGTGTTGTACAATCATTTCAGGCACCAACACGAGGATTCTCGAATCAAATTTTCTTATGGTCACTACTTCATTGCCACCTTCAAGTTTAATAATGAAACAATTGTGCTTCAAGAGGAAACTGATTGCAAACTATTTCTTCTCAATAATAGAGTTGTGACTCTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTTACTATTCTGACCAACGCTATCAATGTGATATTTTGGTTAGGTCCCAAATATGCACTCTACAGTTACATTCTTGTCTGAAGAACGTTCAACGTGTTACTTTAGCAACTATTTCATCAAACTTTCTATTGATTCCATTTGATCATTTTGCTTGTTCTGAATTTTTACAGCTAGAAATTTGCATAACCCCCAAGGTTGCGGTGCAGATGCAAATATTGTTAAGGACCTTAGCTGGACAAATGATCCCCCTGAGCGTGGAGAGTTCAGACACGATAGCCGATGTGAAGGTGAAGATTGTAAATAAGTTAGGGCACCAACCATACGAACAACATATGATATTTTCTGGTAGAAGGCTAGATGACCACCACACCATCGCCTATTATAACATCCAAGAGAATTCTATCATCAATTTCATCCCCGACTTATGGGGGGCATCAGCTGCGAATATTAATAAGGACCGCTGA 1050 0.3924 MEASTQESVDSTEDFNNYSPITVMISDPHAFDCCNCCQSLTIPVFQCVNGHIVCSICYNQLQQKCLQCSNCLIRCRAFENLLKSIEMFCSNEKYGCKERISYIRYKEHVEECIHMPCYCPLSSCDFVGSSEVLYNHFRHQHEDSRIKFSYGHYFIATFKFNNETIVLQEETDCKLFLLNNRVVTLGNAVNISCIGPYYSDQRYQCDILVRSQICTLQLHSCLKNVQRVTLATISSNFLLIPFDHFACSEFLQLEICITPKVAVQMQILLRTLAGQMIPLSVESSDTIADVKVKIVNKLGHQPYEQHMIFSGRRLDDHHTIAYYNIQENSIINFIPDLWGASAANINKDR* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1150 349 SUPERFAMILY TRAF domain-like 85 257 - -
Tpr4g1150 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 137 IPR013083 -
Tpr4g1150 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 7 264 IPR044286 -
Tpr4g1150 349 ProSiteProfiles Ubiquitin domain profile. 265 340 IPR000626 GO:0005515
Tpr4g1150 349 Pfam Seven in absentia protein family 73 152 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr4g1150 349 SMART ubq_7 265 336 IPR000626 GO:0005515
Tpr4g1150 349 ProSiteProfiles Zinc finger SIAH-type profile. 84 142 IPR013010 GO:0008270
Tpr4g1150 349 Pfam Ubiquitin family 267 332 IPR000626 GO:0005515
Tpr4g1150 349 Gene3D - 262 337 - -
Tpr4g1150 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 7 264 - -
Tpr4g1150 349 SUPERFAMILY Ubiquitin-like 261 338 IPR029071 -
Tpr4g1150 349 PRINTS Ubiquitin signature 275 295 IPR019956 -
Tpr4g1150 349 PRINTS Ubiquitin signature 296 316 IPR019956 -
Tpr4g1150 349 PRINTS Ubiquitin signature 317 338 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1150 Tpr-Chr4 10996473 10997974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1150 265 340 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 48.684 4.64e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1150 K04506 - mnt:21409755 213.386