LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g1150	ATGGAGGCAAGCACCCAAGAGTCTGTTGATTCCACAGAAGATTTTAATAATTATAGTCCCATCACTGTGATGATTTCGGACCCACATGCGTTCGATTGTTGCAATTGCTGTCAATCCTTGACCATTCCCGTCTTTCAGTGTGTTAATGGTCATATTGTTTGCTCCATCTGCTATAATCAACTTCAACAAAAGTGTCTCCAATGCTCGAATTGCTTAATACGTTGTAGAGCCTTTGAGAATCTATTGAAATCTATCGAAATGTTTTGCTCGAACGAAAAATATGGGTGCAAGGAGAGGATAAGTTACATTAGATATAAGGAGCATGTAGAAGAATGCATTCATATGCCATGTTACTGCCCCCTTTCAAGTTGTGACTTTGTTGGCTCATCAGAAGTGTTGTACAATCATTTCAGGCACCAACACGAGGATTCTCGAATCAAATTTTCTTATGGTCACTACTTCATTGCCACCTTCAAGTTTAATAATGAAACAATTGTGCTTCAAGAGGAAACTGATTGCAAACTATTTCTTCTCAATAATAGAGTTGTGACTCTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTTACTATTCTGACCAACGCTATCAATGTGATATTTTGGTTAGGTCCCAAATATGCACTCTACAGTTACATTCTTGTCTGAAGAACGTTCAACGTGTTACTTTAGCAACTATTTCATCAAACTTTCTATTGATTCCATTTGATCATTTTGCTTGTTCTGAATTTTTACAGCTAGAAATTTGCATAACCCCCAAGGTTGCGGTGCAGATGCAAATATTGTTAAGGACCTTAGCTGGACAAATGATCCCCCTGAGCGTGGAGAGTTCAGACACGATAGCCGATGTGAAGGTGAAGATTGTAAATAAGTTAGGGCACCAACCATACGAACAACATATGATATTTTCTGGTAGAAGGCTAGATGACCACCACACCATCGCCTATTATAACATCCAAGAGAATTCTATCATCAATTTCATCCCCGACTTATGGGGGGCATCAGCTGCGAATATTAATAAGGACCGCTGA	1050	0.3924	MEASTQESVDSTEDFNNYSPITVMISDPHAFDCCNCCQSLTIPVFQCVNGHIVCSICYNQLQQKCLQCSNCLIRCRAFENLLKSIEMFCSNEKYGCKERISYIRYKEHVEECIHMPCYCPLSSCDFVGSSEVLYNHFRHQHEDSRIKFSYGHYFIATFKFNNETIVLQEETDCKLFLLNNRVVTLGNAVNISCIGPYYSDQRYQCDILVRSQICTLQLHSCLKNVQRVTLATISSNFLLIPFDHFACSEFLQLEICITPKVAVQMQILLRTLAGQMIPLSVESSDTIADVKVKIVNKLGHQPYEQHMIFSGRRLDDHHTIAYYNIQENSIINFIPDLWGASAANINKDR*	350

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g1150	349	SUPERFAMILY	TRAF domain-like	85	257	-	-
	Tpr4g1150	349	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	79	137	IPR013083	-
	Tpr4g1150	349	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4	7	264	IPR044286	-
	Tpr4g1150	349	ProSiteProfiles	Ubiquitin domain profile.	265	340	IPR000626	GO:0005515
	Tpr4g1150	349	Pfam	Seven in absentia protein family	73	152	IPR018121	GO:0005737\|GO:0006511\|GO:0007275
	Tpr4g1150	349	SMART	ubq_7	265	336	IPR000626	GO:0005515
	Tpr4g1150	349	ProSiteProfiles	Zinc finger SIAH-type profile.	84	142	IPR013010	GO:0008270
	Tpr4g1150	349	Pfam	Ubiquitin family	267	332	IPR000626	GO:0005515
	Tpr4g1150	349	Gene3D	-	262	337	-	-
	Tpr4g1150	349	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4	7	264	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g1150	Tpr-Chr4	10996473	10997974	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g1150	265	340	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	48.684	4.64e-18	77.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g1150	K04506		-	mnt:21409755	213.386

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