Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1148 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGCTCAACCCAAGCAACAAGGTTGACTGCAGCTCGGCAGATAGGGGAGATTGCAAAATCGCACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTTGCTGCTGCCCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATAAGCTTGAATGAACTTATTGGTTCTGTTGTAACAAAAATGTCTGAGAGTGGGATATCTTGTAGCGTTGATGATCTGTGTGCATGGCCTTATTTACAAGCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAATAAGGTGCTTGAATTTGGAGCTTTGTTAGCATCAGGAGGACAGGAATACGATATCGGAAGTGATAATATAAAGAACCCAAAGGAGCGTTTGGTTCGCCAAAAGCAAAATCTCCGACGCCGTTTAGGTTTGGATGTATGCGAACAATTTATGGATATAAATGATGTAATAAGAGATGAAGATCTTATGGCACACAAATCAGACTCGTATCTCAATGGTGCAGATCATAAAGTATTTACATCTTGTTCTGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCCAATGTCAAATCAAAGTGGCCGAGTGCTAGAGAACGGAATCTTTTAAAACGCAAAGCAAAAAATAACTCAAAGGACCAAACGAAGAGCTGGTGTGAAGATGGAACAGAGGCTTCAGGCACTCAAAATTTGGCCTCAAAAGGCCCATGTCCCGATTCAGTAAATTATAGTAAGCCATTCACACAAGTTAATCACGACGAAGATGGATTTGAGCATGAGGAAGATGGACAATGGCCTTTCAGTACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGGCATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGAGTGTTGAAACACGACCCACACCTGGAAAGGACCTCATTTGTGGAATTAGAAGACAAAAATATAACCAATATGTTGAAGAGAGAGAGGGATATTGATTTAAATATGCAAGTTTCAGCAGATGAGTGTGTCTCAAACTTGAAAAGGCCAAAACTTGAAGATGTATCGTTGTCAACCTCTATGGATAGCGTGATGACTTGCAGCAACGATGGTGATATTGAAAACAGCATTACCTCTGAAATCCTGGGGTGCAATTTACCTGTGGACTTCGGGAATGGGAAATTTAATGGTAGTTCTATTGACATGAATCTGGAAACTCACTCTAACGATTTACATGATGCACACAAGGAACCTGCTAATATAGCAGAGCAGAAGGGTTATTCTGACGACAAAATGATCCCCTCTGGAAACCCTAATGTGCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAACTTGGTTAAAGTGACTAGAAGTTCCTGGCTTCGGAACTGTGAATTTCTTCATGATTGTGTCATACGCTTTTTGTGTGTATTGTCACTTGACCGCTTCGGAGATTATGTATCTGATCAGGTTGTTGCGCCAGTGCGTGAAACCTGTGCACAGGCACTAGGTGCTGCATTTAAGTATATGCATGCTGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGCCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTTCCGATTTGCTTGGGCGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCCGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTGCATTCAATTGTGATGCTGTTGTGGGATATATTGCTTGATTTAGATGATTTAAGTCCGTCCACTAGCAGTGTAATGAATCTGCTTGCAGAAATCTATTCTCATGAAGAGATGGTCCCAAAGATGTATAAAGTTTTTAAATTGGAAGACAAGGAAATAGAAAATGGAGCTGGTGGTTGTGGTGATGCTGGAGAAGAAAATCCTTTTGTACTTTCAACTCTGGCACCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTGCGTTATTCAGCAATACGAACTCTGGAGAGGCTACTCGAAGCTGGTTATAAGAGAAGCATGTCTGAGCTCTCTGGTGCTTCATTTTGGCCCTCTTCAATATTTGGAGATACCCTTAGAATTGTCTTTCAAAATTTACTTTTGGAAACAAATGATGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACCTGGAGACAGCTTCAAGGTCTTACATGACTTCCTGGATAGAACTTGCCTCTACACCTTTTGGTTCTGCATTAGATCCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAGGACTGAAAATGAATATGGCGGAGATCTTGGCCTTGAATCTACAATATCAACTATTCCACATGATAGAAATGGAGATGTTCCTATGAATTCCATTAAGATAGTTGTTGGTGCTGAGGTTGACACATCTGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAATTTTCGCCTCTAAGCTTCCAGAGGGTTCTTTAAAAAATACAATTGATCCACTGTGGAGTTCATTAACCTCTTTTTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAGGACCAGTAATTTGTCTGAAAGCCTCAATGGTATTCCTGCTTCTCTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGATCCTGCATTGCCGACAAAAAGTTCACTTCTTCCTTATGCTGAGCTTTCAAGAACTTATTCTAAGATGCGAAATGAGGCAAGTCAATTGCTAAATGCAGTCAAATCTTCTGGTATGTTTAGCGAGTTATTGACAACAACCAATATTGAGTTGGATAACTTGAGTGTAGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCATTGTGTAATGATAGTTCTGCAAATGAATCTTTGAGAAAGAACACTATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTTACATCTGCAGTTGCAGCTGCAGTTGTGTGGATGTCTGAGTTTCCTACACGGCTCACCCCCATCATTTTGCCTTTGATGGCCTCAATCAAACGCGAGCAGGAGGAAATACTGCAAACTAAGTCAGCTGAGGCTCTTGCTGAACTAATATATCACTGTGTTTCACGTAGACCTTGCCCCAATGATAAATTAATCAAGAATATTTGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCACAAGCTAAACTCATTTGTTCTATGGAGAGTATTGATGACCAAGGTCTGCTGTCTTTCAGAACTCCTGTGAATAAACAGAAGTCAAAGGTGCATGTGCTGACTGGTGAGGACCGATCAAAGGCGGAAGGATTTATAAGTAGACGTGGATCTGAGCTAGCACTGAAGCTTCTGTGTGAGAAGTTCGGTGTTTTGCTATTTGATAAGGTTCCTAAGCTGTGGGATTGCCTTACTGAGGTTCTTAAGCCAAGCTCCTATGAATCTCTACTTGCCGCTACTGAAAAGCATGATACTGTTGCAATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTCGTGCGATCTGTTGCTCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCCATCTGTTTTTAAATGTGTTAAGCACTCTCATGTCGCAGTTAGACTAGCTGCTTCACGCTGTATCACTTCCATGGCCCAATCAATGATTGTGAAAGTTATGGGAGCCGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCCTCGTCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTAGAATTGGTCCCTTATGCTCCTCTGCTGGTTGTTCCCCTTCTACGGTGCATGAGTGATTCTGATCAGTCTGTCAGACAGAGTGTGACCCATAGCTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGCGGTGTTCCACAACCAACTGGATTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTACATTTTCTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACAGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATCGTGGCCTCTGAAATAGTTGAGCGCCAAACTCAAATCGGCAATGAGGATCTTCTTCCATCTTTAATTATTTGCCCGTCGACACTAGTTGGGCACTGGGCTTTTGAGATAGAAAAGTATATTGATGTTTCAGTCATATCTAGTCTTCAGTATGCTGGTTCTGCTCAGGATCGAATGCTTCTTCGAGATAGTTTTTGCAAACATAATGTTATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCCAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCCATACAGAATAATATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACAGATAGACAGTTCCAAGGCACATATGGGAAACCACTTTTAGCTGCAAGAGATCCAAAGTGCTCTGCGAAGGATGCCGAAGCTGGAGCACTTGCTATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGGAGGACAAAGGATGAAGTCTTGTCCGATCTGCCGGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCTCTGTGCAACTTAAACTTTACGAACAGTTTTCTGGGTCTCGTGCGAAACAAGAGATGTCATCTATTGTAACAACGAATGAGTCAGCTGCAGCAGAAGGAAGTAGCAGTACTACTAAAGCATCTTCACATGTTTTCCAGGCACTTCAATACTTGCTAAAACTTTGTAGTCATCCATTGCTTGTACTTGGTGGGAAGATTCCAGATTCACTTTCTACCATCCTCTCAGAAGTGTTCCCTGCTGGCTCCGATATCATTTCAGAACTTCACAAACTCCACCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGACGCTTCGGGTTCTGAGGCTGCTGTTGGCTTTGGGCAGCATAGGGTCTTAATATTTGCTCAACATAAGGTAATATTTACCTTTTTCTTTGGGGCTAATTTCTTTCAAAGACTAATAAACAGTTTACTGATTTGTCGTTTAAAAATGGTTTGTGTGCAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACACACATGAAAAATGTCACATATTTGCGGCTGGATGGATCAGTTGAGACTGAGAAGCGATTTGAAATCGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTCACGACTCATGTGGGCGGGCTTGGTTTGAACCTAACATCTGCAGATACACTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGCGATCTTCAGGCTATGGATAGAGCGCATAGGTTAGGTCAGAAAAAAGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACATTGGAAGAGAAAGTTATGAGTCTACAACGGTTTAAAGTGTCAGTTGCTAATGCGGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAGTCCCCAAGAAGGGCTCTTCTGTTGCAAAGAGTTCAGAGGACAACGCTGATGGAGACGTAGGCACCGGAAAGGGATTGAAAGCAATACTTGGGGGATTGGAGGATCTATGGGATCAATCACAATATACCGAAGAGTACAATTTGAGTCAATTTTTGGCAAAGCTTAATGGTTAA 6228 0.4149 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHISLNELIGSVVTKMSESGISCSVDDLCAWPYLQAKITGSSFRSFDMNKVLEFGALLASGGQEYDIGSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLMAHKSDSYLNGADHKVFTSCSVHNIQKMVANMVPNVKSKWPSARERNLLKRKAKNNSKDQTKSWCEDGTEASGTQNLASKGPCPDSVNYSKPFTQVNHDEDGFEHEEDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKHDPHLERTSFVELEDKNITNMLKRERDIDLNMQVSADECVSNLKRPKLEDVSLSTSMDSVMTCSNDGDIENSITSEILGCNLPVDFGNGKFNGSSIDMNLETHSNDLHDAHKEPANIAEQKGYSDDKMIPSGNPNVLRNLPQNCELMNLVKVTRSSWLRNCEFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHEEMVPKMYKVFKLEDKEIENGAGGCGDAGEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNDDILQCSERVWSLLVQCSVEDLETASRSYMTSWIELASTPFGSALDPSKMFWPVAFPRKSQFRAAAKMRAVRTENEYGGDLGLESTISTIPHDRNGDVPMNSIKIVVGAEVDTSVTRTRVVTATALGIFASKLPEGSLKNTIDPLWSSLTSFSGVQRQVASMVLISWFKEIRTSNLSESLNGIPASLKGWLLDLLACSDPALPTKSSLLPYAELSRTYSKMRNEASQLLNAVKSSGMFSELLTTTNIELDNLSVDDAIGFASKIPALCNDSSANESLRKNTMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQTKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKLICSMESIDDQGLLSFRTPVNKQKSKVHVLTGEDRSKAEGFISRRGSELALKLLCEKFGVLLFDKVPKLWDCLTEVLKPSSYESLLAATEKHDTVAIESVSDPQTLINNIQVVRSVAPLLNEELKPKLLTLLPSVFKCVKHSHVAVRLAASRCITSMAQSMIVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDSDQSVRQSVTHSFAALVPLLPLARGVPQPTGLGEGVSRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIVERQTQIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYAGSAQDRMLLRDSFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQGTYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSSVQLKLYEQFSGSRAKQEMSSIVTTNESAAAEGSSSTTKASSHVFQALQYLLKLCSHPLLVLGGKIPDSLSTILSEVFPAGSDIISELHKLHHSPKLVALHEILEECGIGVDASGSEAAVGFGQHRVLIFAQHKVIFTFFFGANFFQRLINSLLICRLKMVCVQAFLDIIEKDLFQTHMKNVTYLRLDGSVETEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASAEVPKKGSSVAKSSEDNADGDVGTGKGLKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG* 2076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1148 2075 Coils Coil 982 1002 - -
Tpr4g1148 2075 Pfam Helicase conserved C-terminal domain 1878 1960 IPR001650 -
Tpr4g1148 2075 Gene3D - 1424 1683 IPR038718 -
Tpr4g1148 2075 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1851 2010 IPR001650 -
Tpr4g1148 2075 Pfam SNF2-related domain 1470 1766 IPR000330 GO:0005524|GO:0140658
Tpr4g1148 2075 Gene3D - 1694 2037 IPR027417 -
Tpr4g1148 2075 SMART ultradead3 1448 1642 IPR014001 -
Tpr4g1148 2075 MobiDBLite consensus disorder prediction 234 250 - -
Tpr4g1148 2075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1685 2015 IPR027417 -
Tpr4g1148 2075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1431 1684 IPR027417 -
Tpr4g1148 2075 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 2010 IPR044972 GO:0003677|GO:0016887|GO:0017025
Tpr4g1148 2075 CDD SF2_C_SNF 1799 1971 - -
Tpr4g1148 2075 Pfam Domain of unknown function (DUF3535) 781 1235 IPR022707 -
Tpr4g1148 2075 Gene3D - 4 94 IPR011989 -
Tpr4g1148 2075 SUPERFAMILY ARM repeat 6 1489 IPR016024 -
Tpr4g1148 2075 SMART helicmild6 1874 1960 IPR001650 -
Tpr4g1148 2075 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1464 1634 IPR014001 -
Tpr4g1148 2075 MobiDBLite consensus disorder prediction 234 269 - -
Tpr4g1148 2075 CDD DEXHc_Mot1 1452 1684 IPR044078 GO:0005524
Tpr4g1148 2075 Gene3D - 507 689 IPR011989 -
Tpr4g1148 2075 Gene3D - 1257 1412 IPR011989 -
Tpr4g1148 2075 MobiDBLite consensus disorder prediction 251 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1148 Tpr-Chr4 10955981 10979109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1148 1510 2014 RAD5 or RAD16-like Gene Family AT5G22750 27.065 2.76e-42 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr4g1148 DUF3535 9.4e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1148 K15192 - gmx:100777977 3427.88