Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1135 ATGCAACCTAGTTCCGGCGGTGGTGGCGGTGGTTTGACACGGTTTCATTCAACTCCGGCGAGTTGGATAGAATCATTTATTCTTAAAGAAGAGGAAGTTGATGAAAGGCAGCAGCAACAAGACAACTTAAGTTTTACTCAACTGCTTTCCAATAACGCTGTTGGTGGCTCTTCAAATTCTGATTCTCGATCTCAACCATATTTATCTCATTACTATTACAACTCTTCAACTCATACCCCCACTTCTGCCAATGCTAGTAATAATCCCTTCACACAGGGAGTTGAGGATAGTGCTGATGCACTGGACCTTAAAATGGACAAGATTTTAGAGGATTCAGTTCCTTGTAAGATTCGGGCTAAGCGTGGTTTTGCTACACATCCAAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGTATTAGTGACCGCATAAGAAAACTTCAAGAACTGGTGCCGAACATGGATAAGCAAACAAATACTGCAGAGATGTTAGATGAGGCAGTAGCTTATGTCAAGTTTCTACAAAATCAAATCGAGGAGCTAAAAGAACAACAACGAAGGTGTAAATGCACAATTCACGAGTAA 582 0.4175 MQPSSGGGGGGLTRFHSTPASWIESFILKEEEVDERQQQQDNLSFTQLLSNNAVGGSSNSDSRSQPYLSHYYYNSSTHTPTSANASNNPFTQGVEDSADALDLKMDKILEDSVPCKIRAKRGFATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAEMLDEAVAYVKFLQNQIEELKEQQRRCKCTIHE* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1135 193 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 191 - -
Tpr4g1135 193 CDD bHLH_AtbHLH_like 128 180 IPR045239 -
Tpr4g1135 193 Gene3D - 124 193 IPR036638 GO:0046983
Tpr4g1135 193 PANTHER TRANSCRIPTION FACTOR BHLH80 100 191 - -
Tpr4g1135 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 173 IPR011598 GO:0046983
Tpr4g1135 193 SMART finulus 129 179 IPR011598 GO:0046983
Tpr4g1135 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 191 IPR036638 GO:0046983
Tpr4g1135 193 Pfam Helix-loop-helix DNA-binding domain 128 174 IPR011598 GO:0046983
Tpr4g1135 193 Coils Coil 163 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1135 Tpr-Chr4 10842122 10845689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1135 102 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 73.913 2.04e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g1135 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1135 - - aprc:113865701 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1135 4 10842122 10845689 Tpr4g1135 4 10842122 10845689 ECH