Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1133 ATGTCAAGCGGAAAGAAAACCCGAGGTCGACAAAAAGTTGACATGAAAAAGATAAGCAAGGAAAGTGACTTGCATGTCACTTTCTCAAAGCGCCGCAATGGCCTCATCAAGAAAGCCAATGAGCTTTTTGCTCTTTGTGGTGCATATGTTGCACTAATTGTGTTTTCCCCTAGTGGGAAGGTATTTTCTTTTGGTCACCCGGACGTTTATACGATCATAGAACGTTTTCTCTCAGGGGTCCAACCTCCAATCAATGGCATAAGGCAATTCATTGAGGCTACTCGTAATGCTAGTGCGCGTGGGCGCAATGCTGAACTGACTCTGCTCAATGATGCACTGGAAATCGAGAAACGCCGCGGTGATGATCTGAGTCATTTGTGCAGGATAATTGAGGATCCGTCTTGGTGGACATCTCCCATTGATGGGTTGAACTTGAACCAAGCTCAACTTGAATTATTGAAGGCTGCATTGGAGGAGGTGAATAAACATGTTGGTCAACAAGCTGATCAACTTGTAAATCTGGATGCTCCTACCCAAACTGAACAAGCTCAAATGATGCCGGCAGAATTTTTTCAGAATCCAATGTTGCAACCTGATTTGTTGGGCTTCAATAATATGCAAGGATGGGAATATGGTGGACCCTCCGGATCATTTTGA 657 0.4429 MSSGKKTRGRQKVDMKKISKESDLHVTFSKRRNGLIKKANELFALCGAYVALIVFSPSGKVFSFGHPDVYTIIERFLSGVQPPINGIRQFIEATRNASARGRNAELTLLNDALEIEKRRGDDLSHLCRIIEDPSWWTSPIDGLNLNQAQLELLKAALEEVNKHVGQQADQLVNLDAPTQTEQAQMMPAEFFQNPMLQPDLLGFNNMQGWEYGGPSGSF* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1133 218 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr4g1133 218 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr4g1133 218 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr4g1133 218 PANTHER MADS BOX PROTEIN 7 172 - -
Tpr4g1133 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr4g1133 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 172 - -
Tpr4g1133 218 Gene3D - 21 83 IPR036879 GO:0003677|GO:0046983
Tpr4g1133 218 SUPERFAMILY SRF-like 9 79 IPR036879 GO:0003677|GO:0046983
Tpr4g1133 218 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr4g1133 218 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr4g1133 218 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr4g1133 218 Coils Coil 143 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1133 Tpr-Chr4 10812833 10813607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1133 5 178 Type I MADS-box Gene Family AT5G60440 42.938 1.07e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g1133 SRF-TF 7.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1133 - - mtr:MTR_1g106070 198.364