Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1119 ATGTCGAGCGAAAGGACAAGCCAAGGTCGCAAAAAGATTGTGATAAAAAAGATGATCAATGAGATCCACTTGCAAGTGACTTTCTCAAAGCGTCGTAGTGGGCTCTTCAAAAAAGCTAGCGAGCTTTGCACTCTTTGTGGTGCAGATGTTGCACTCATTGTATTTTCTCCTACTAAGAAGGTGTTTTCTTTTGGGCATCCCAATGTTGATACGGTCATAGATCGTTATCTCTCGCTTGTCCCACCTCAAAACAATAGAACCATGGAATTAATTGAGGCTCAACGTTGCGCCAATGTGCGCGAGCTCAATGCTCAGTTGACTATGCTCAACAACACACTGGACCTCGAGAAGAGGCGTAGTGATGAGCTGAATCATATGCTCAAGATGAATCAGGCTCAGTATTGGTGGGCTTGTCCCATTGATGGGATGAACAAGGTTCAACTTGAAATATTCAAGAAATCTTTGGAGGATTTGAAGATACTTGTTGCTCAACAAGCCCAACGGGCTCAATTCTTTGAGACACAATTCTTTCAGAATCCCTTGTTCCACCCTGAATTGTTTGGCTTCGACAATATGGGAGGCCAAGGAGGATATGAACCCTCTGGATTCTTTTGA 615 0.4358 MSSERTSQGRKKIVIKKMINEIHLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPTKKVFSFGHPNVDTVIDRYLSLVPPQNNRTMELIEAQRCANVRELNAQLTMLNNTLDLEKRRSDELNHMLKMNQAQYWWACPIDGMNKVQLEIFKKSLEDLKILVAQQAQRAQFFETQFFQNPLFHPELFGFDNMGGQGGYEPSGFF* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1119 204 Gene3D - 89 176 - -
Tpr4g1119 204 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr4g1119 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 64 IPR002100 GO:0003677|GO:0046983
Tpr4g1119 204 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Tpr4g1119 204 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr4g1119 204 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr4g1119 204 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Tpr4g1119 204 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 165 - -
Tpr4g1119 204 Coils Coil 99 119 - -
Tpr4g1119 204 PANTHER MADS BOX PROTEIN 7 165 - -
Tpr4g1119 204 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr4g1119 204 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr4g1119 204 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1119 Tpr-Chr4 10720091 10720799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1119 5 191 Type I MADS-box Gene Family AT5G60440 48.705 6.72e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g1119 SRF-TF 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1119 - - mtr:MTR_1g106070 244.588