Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1113 ATGATGAGCACCAAACAAGTTATTACATGTAAAGCTGCAATTTGTTGGGGGTCAGGAAAAGGAGTAACAGTGGAAGAGATTGAAGTTGATCCACCAAAAGCAACTGAAATTAGGGTGAAGATGTTGTGTGCAAGTATTTGCCACACAGACATCACAAGCATTCAAGGTTACCAATATAATAAATTTCCTCTAGCACTTGGACATGAAGGAGTGGGTGTTGTCGAAAGTGTGGGTGATAGTGTAAAAAATGTGAAAGAAGGTGATATGATAATTCCAACATACATAGGTGAGTGTAAAGAATGTGAGAATTGTATTTCAGGGGAAACAAATCTCTGCCTAACCCACCCTTTAAGATTAAGTGGCTTAATGTCGGATAACACTTCAAGAATGTCCATTCAAGGACAAAGATTGTACCATGTTTTGAGTTGTGCTACATGGTCAGAATACATGGTTATTGATGCTAATTACATTCTTAAAGTTGATCCAAACATTGATCTTGCTCATGCAAGTTTCATCTCATGTGGATTTACAACTGGTTTTGGAGCTGCTTGGAAAGAAGCTAAGGTTAAAAAGGGTTCAAGTGTAGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAGATGGTGGGAGCAACTAAGATAATTGGTATTGACAAAAATGAAATGAGGAGGGAAAAAGGAGAAGCATTTGGAATGACTCATTTTATAAATCCTAGTGATTCCAATAAATCAGCTTTAGAATTGGTAAAAGAACTAAGTGATGGAATGGGTGTGGATTACTCCTTTGAGTGCACTGGAGCTCCTCCTTTACTTACTATATCGGTGGAAGCCACAAAAATGGGTAGAGGTAAAACAATAGCAATTGGTGCTGGACTTGAACCTATTGTTCCTTTTGGCTATCTTTCCATTTTACTTGGTAGGACATTAAAAGGTTCTATTTTTGGAGGGATAAAAGCTACATCAGATCTTTCCATCATTGCTGACAAATGTCTCAAAGAGGAATTCCCTCTTGAAGAGTTATTCACCCACGAAATTCCATTGATAGATATAAACAAAGCATTTGAGTTTTTGAAGCAACCTGATTGTGTGAAAGTCGTCGTCAAGATGTGA 1125 0.3804 MMSTKQVITCKAAICWGSGKGVTVEEIEVDPPKATEIRVKMLCASICHTDITSIQGYQYNKFPLALGHEGVGVVESVGDSVKNVKEGDMIIPTYIGECKECENCISGETNLCLTHPLRLSGLMSDNTSRMSIQGQRLYHVLSCATWSEYMVIDANYILKVDPNIDLAHASFISCGFTTGFGAAWKEAKVKKGSSVAVFGLGAVGLGAISGAKMVGATKIIGIDKNEMRREKGEAFGMTHFINPSDSNKSALELVKELSDGMGVDYSFECTGAPPLLTISVEATKMGRGKTIAIGAGLEPIVPFGYLSILLGRTLKGSIFGGIKATSDLSIIADKCLKEEFPLEELFTHEIPLIDINKAFEFLKQPDCVKVVVKM* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1113 374 Pfam Zinc-binding dehydrogenase 202 322 IPR013149 -
Tpr4g1113 374 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
Tpr4g1113 374 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Tpr4g1113 374 Gene3D - 179 317 - -
Tpr4g1113 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Tpr4g1113 374 SUPERFAMILY GroES-like 4 190 IPR011032 -
Tpr4g1113 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 333 IPR036291 -
Tpr4g1113 374 CDD liver_alcohol_DH_like 8 373 - -
Tpr4g1113 374 Gene3D - 14 369 - -
Tpr4g1113 374 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1113 Tpr-Chr4 10649111 10654824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1113 35 366 Monolignol Biosynthesis Gene Families AT2G21730 25.872 6.53e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1113 K00121 - gmx:100798341 604.364