Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1094 ATGGCTGAATACGAAGCAGAAGAGAGATACGAAGAACAAGAAAACGGCGGAGGTGCAGAGGATCTTGATACCACTCATCAATTTCCTTCTTCTGCATCTTCTCCTCAACCTCTCGATCAATCTGTTTCCAAATCTCGCCATGAATCTCGTGATTATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAGCGAGAGAAAGATAGGAAAAGAGAAAAGGAGAGGCACAGAGATAGAGACAGCGAGAGAGATCGTGGTGATGGGGAGAAGGAAAGGGATCACCACCGCAGAGATCATCGACATCGCGACAGAAAAGATGGCGGAAGGGATAGGGGTAGGGATAGAGACAGGGATGATGGTGATTCTCACCGAAGTCGTGACCGTGACAGAAGAAGGGATTATGATCGAGAGGAAAGGCATAAGCGTAGGTCTCGGTCTCGATCTATTTCACCTCCTAAGGATAGATCTGAGCATGGAACAAGGTCACGGTCTCGCTCAAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTCCTTCTGCAATGTTAGCTGGTCCTGCCGGTGTTACAGGTCAGATTACTGCGCCAAATCCTGCAATTCCTGGAGTGTTGCAAAACATGTTTCCAATGGCTAATAATCAGATGCAGCAATTCAATGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTGTATGTTGGTGGACTCCCTCCTACAGCCAATGAGCAGTCTGTTGCTATTTTCTTCAGCCAGGTCATGGCTAGTATTGGAGGAAATACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTCGCCTTTGTTGAGATGAGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGAATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGGTTAACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTAAGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTATACCAAGATCTTGCAGTTACCGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAACGCAGTTGCTCCTGACGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGATGACATGAGACAGGAATGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGCCCACAACCAGATGGGGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATATCGAGGGTGCTACAAAAGCCCGCACTGGATTGAATGGGAGAAAATTTGGTGGAAATGAAGTAATAGCCGTCTTCTATCCAGAAAACAAATTTGCTCAGGGAGATTATGAAGGCTAA 1719 0.4567 MAEYEAEERYEEQENGGGAEDLDTTHQFPSSASSPQPLDQSVSKSRHESRDYDRESSRSREKEREKDRKREKERHRDRDSERDRGDGEKERDHHRRDHRHRDRKDGGRDRGRDRDRDDGDSHRSRDRDRRRDYDREERHKRRSRSRSISPPKDRSEHGTRSRSRSKSKRVSGFDLAPPPSAMLAGPAGVTGQITAPNPAIPGVLQNMFPMANNQMQQFNALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMASIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEIIDDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYEG* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1094 572 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 48 570 IPR006529 GO:0003723|GO:0005634|GO:0006397
Tpr4g1094 572 MobiDBLite consensus disorder prediction 43 95 - -
Tpr4g1094 572 CDD RRM1_U2AF65 237 319 - -
Tpr4g1094 572 Coils Coil 52 72 - -
Tpr4g1094 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 321 IPR000504 GO:0003723
Tpr4g1094 572 CDD RRM3_U2AF65 470 558 - -
Tpr4g1094 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 436 IPR000504 GO:0003723
Tpr4g1094 572 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 10 571 - -
Tpr4g1094 572 MobiDBLite consensus disorder prediction 1 188 - -
Tpr4g1094 572 MobiDBLite consensus disorder prediction 102 160 - -
Tpr4g1094 572 Gene3D - 349 454 IPR012677 -
Tpr4g1094 572 MobiDBLite consensus disorder prediction 24 42 - -
Tpr4g1094 572 SUPERFAMILY RNA-binding domain, RBD 218 324 IPR035979 GO:0003676
Tpr4g1094 572 SMART rrm1_1 359 432 IPR000504 GO:0003723
Tpr4g1094 572 SMART rrm1_1 472 558 IPR000504 GO:0003723
Tpr4g1094 572 SMART rrm1_1 239 317 IPR000504 GO:0003723
Tpr4g1094 572 CDD RRM2_U2AF65 358 434 - -
Tpr4g1094 572 SUPERFAMILY RNA-binding domain, RBD 359 561 IPR035979 GO:0003676
Tpr4g1094 572 PANTHER RNA-BINDING PROTEIN 10 571 - -
Tpr4g1094 572 Gene3D - 466 571 IPR012677 -
Tpr4g1094 572 Gene3D - 233 334 IPR012677 -
Tpr4g1094 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 495 555 IPR000504 GO:0003723
Tpr4g1094 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 429 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1094 Tpr-Chr4 10532265 10538450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1094 360 551 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 2.56e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1094 K12837 - gmx:100793801 740.339