Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1072 ATGTCTGAATCTCAAGGTTCTTCTTCTTCTTCTAATGATTCAGACATAGATAATAACGATTCAGGTTGTTGTTCCAACAGATCTAATCCTTCTGGAGTAGCTGAATTGAAGCTTTACAGAGCTTTTATATTCTCTGTTCCAATTTTCTTCACTTTGATTCTTCTTTTTCTTTTCTATGTTTTTTATTTGAGACCAAGAAGAGTTGATTGGTCTTCTATTAGGATGAGGTCTGTTTCTGTTCTACAACATAATCATAACAATGCAATTTCAACTTCTGATATGGGGTTGAATAAAGAATTGAGAGAGATGCTGCCTATTATTGTGTACAATGAAAGCTTCTTTGTCAAAGATACACAATGCTCAGTATGTCTTTTGGATTACCAATCAGACGACAGACTTCAACAAATACCTGCATGCGGGCATACGTTTCACATGAGTTGCATTGATCTTTGGCTTTCCAGCCACAGCACCTGCCCTCTTTGTCGTCTGTCGCTACTACCTACTGCTAAATCTTCAACAGAAACATCCAATATGCAGGCCACAAGCAATGAAGAAATAGAGATGCAACAAAGCAATGAAGAAACACTAACAATGGAATTCTCTGACTCAAGATCTACTAGGCATCAAGAAACCACTGTCATTCAAAATGTCTCCGGAGAAATTGTGATCAGCGCTCACCACATCAATGTTGAGGGAGAAAATGCGAGAAACAACCAATAG 720 0.3792 MSESQGSSSSSNDSDIDNNDSGCCSNRSNPSGVAELKLYRAFIFSVPIFFTLILLFLFYVFYLRPRRVDWSSIRMRSVSVLQHNHNNAISTSDMGLNKELREMLPIIVYNESFFVKDTQCSVCLLDYQSDDRLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLPTAKSSTETSNMQATSNEEIEMQQSNEETLTMEFSDSRSTRHQETTVIQNVSGEIVISAHHINVEGENARNNQ* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1072 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 169 IPR013083 -
Tpr4g1072 239 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 9 199 - -
Tpr4g1072 239 CDD RING-H2_EL5_like 119 162 - -
Tpr4g1072 239 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Tpr4g1072 239 Pfam Ring finger domain 119 162 IPR001841 -
Tpr4g1072 239 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g1072 239 SUPERFAMILY RING/U-box 104 168 - -
Tpr4g1072 239 SMART ring_2 120 161 IPR001841 -
Tpr4g1072 239 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 9 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1072 Tpr-Chr4 10342053 10345200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1072 28 167 C3H Transcription Factor Family AT4G10150 61.538 1.37e-64 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1072 K19039 - gmx:100794211 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1072 4 10342053 10345200 Tpr4g1072 4 10342053 10345200 ECH