Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1062 ATGGAAAGAGAATTTGAAAGAGGTTACATTAAAAAAGGACCATGGAGCAGTGAAGAAGATGAAGTGTTGTTGAAACATGTTAACAAGTATGGTCCTCGGGATTGGAGCTGCATTCGATCCAAAGGTCTTTTACCGCGAACCGGCAAATCTTGCCGGTTAAGATGGGTTAACAAACTTAGACCCGACTTGAAAACAGGGTGCAAGTTTTCAGCAGAGGAGGAAAGAGTGGTGATTGAATTACAGGGGCAATTTGGGAACAGATGGGCAAAGATTGCTACTTATTTGGAAGGAAGAACAGACAATGATGTGAAGAACTTCTGGAGTAGCAGGAAAAAAAAGATGAAGAGGACATATCCAAGGACACCATCACCACCATCAAAGAAGCACAAAAACAAAGGAAAAACTATTCCTAATCAACTCAAAGTTGAAAAGGTTCCTGAAAGTGATTCCAATCACTTGGATGAAAACCTTACTCACCCAATTTCTTATATGGGAAACAAAGAAGTGTTCAAGATGATCAACCTTCCAGATTTGACAAAGCCAAACTACCTAGATTTGAAAAATGAACTTAATGCAGTTGAGGTTGAAGAAGCCACTCCACTTCACACAGTACCATCATTTGAGTCTTCATCAGGGTACAACTTTCCTCTACCCCCTGAATCACAAATGGACTTTCCACTATTCCCAGAGTGTCAAGACATTGTTCAAGAGCCTTTTTACCCAAATTTTATGGACATGTTTGAGCAGAAAAAGTGTTCAGAAAGTGTATGGAGTCAGAAGATTGGGACCAAGTTGCCAAGTTTTGGACTTGAAGGAACTTCTCAGAGTGCAAGCTCAAGCTGTTCCTTTAAGGACATCCCAACTGAGATATTTGAATACTTTGCTCAATAG 891 0.4018 MEREFERGYIKKGPWSSEEDEVLLKHVNKYGPRDWSCIRSKGLLPRTGKSCRLRWVNKLRPDLKTGCKFSAEEERVVIELQGQFGNRWAKIATYLEGRTDNDVKNFWSSRKKKMKRTYPRTPSPPSKKHKNKGKTIPNQLKVEKVPESDSNHLDENLTHPISYMGNKEVFKMINLPDLTKPNYLDLKNELNAVEVEEATPLHTVPSFESSSGYNFPLPPESQMDFPLFPECQDIVQEPFYPNFMDMFEQKKCSESVWSQKIGTKLPSFGLEGTSQSASSSCSFKDIPTEIFEYFAQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1062 296 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Tpr4g1062 296 Gene3D - 11 64 - -
Tpr4g1062 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Tpr4g1062 296 MobiDBLite consensus disorder prediction 109 136 - -
Tpr4g1062 296 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Tpr4g1062 296 PANTHER TRANSCRIPTION FACTOR DUO1 1 295 - -
Tpr4g1062 296 SMART sant 11 61 IPR001005 -
Tpr4g1062 296 SMART sant 65 113 IPR001005 -
Tpr4g1062 296 Pfam Myb-like DNA-binding domain 15 65 - -
Tpr4g1062 296 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Tpr4g1062 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Tpr4g1062 296 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Tpr4g1062 296 CDD SANT 68 107 IPR001005 -
Tpr4g1062 296 CDD SANT 14 59 IPR001005 -
Tpr4g1062 296 Gene3D - 68 141 - -
Tpr4g1062 296 PANTHER MYB TRANSCRIPTION FACTOR 1 295 - -
Tpr4g1062 296 MobiDBLite consensus disorder prediction 109 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1062 Tpr-Chr4 10275066 10276707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1062 10 117 MYB Transcription Factor Family AT3G60460 79.630 1.99e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g1062 Myb_DNA-bind_6 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1062 K09422 - gmx:121173231 411.379