Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1056 ATGTCCATGGAGCCTATGGATCAAACTAGTAGCAGTACATCAGTAGTTGCATTTGATTCTGTATTGGAAGAATTGGAAGTGGCGGAGGAAAATATACGGAATCGAATTGTACATCTCGAAGCAATTACTTCGAGAGCGAGGCAGCGTCAGAGGTTGGCGAGGGTGCAGACTCCGATTCAGATAACCAATTTTACAGGAGAAGCAGCAATTGCAGATGGTGTTCAAGTTGAAGAAGGAAGGGTGGAGGTGGAGCAGAATGTTGTTGAGGAAAGAGTAGTTGAGAGTGTGAAAGGGGGAAAAAGGAAAAGTGCTCATTTAGTTGCCAAAGCTTTGGGGATTGAAGAGATTGATGACGGTAAAATGGAGGAGAGTAGTGGGAATTTTTTTGATTGTAATATATGTTTGGATATTGCAAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTTTATCAGTTGTCGTATGTGTATTCGAAAGCGAAGGAATGTCCTGTTTGTAAAGGAGAGGTTACTGAATCGGGTATTATTCCGATTTATGGGAATGGAAATGGCGGTGGTGATCGTCAGATGGAAATGAAAGAAGCCGGTTTAAGGGTTCCTCCTCGACCTAAGGCACCTAGAGTTGAGAGTCTTAGACAAAAGTTGATAAGCCGAGGAGTGTCTTCTTCTTCTTCTATTGTACAAAGCCTTCGACGGTTTCATAACCGAATTGGTGGATTTGGAGAGCAAGTTCAGTTGGAAAGTTCTAATACAACAGCTGATAGAAATAATGGTTTGCCGACTTTGCTCGATCAATCTCGCACGCAGACAGATGATAATAATCAACATGCTGGTTCTGAACAGGTGTCAAGGTTGCTGGGGCAAGGAGCTTCTTCATTTTCGACGCTTTCAACAGCATTGAATTCGGCAATGGATTCTGCAGAAAGATTAGTTCAGGACCTTGAATCATATATTCATGGTCGCAGAATAGGAGGAAGCAGAGAGCAACATCCTCGTGTTGTTAATAGAAGTTCAAACGGGTCAGAGAGTCGTGCTCAAGATGTTGTTGCCGTGACCAATTCTGCAGCTGCAGCAGCTTCTGTGTCTCCTTTATCTAGTAATGTTGACAATATTGCTGCTATAGGTTCAGAAACTCAAACAACTGATAGAAACGTTCAGATTAGTCCGCCAGACCCTTCTTCATCAAATGGCAGACGAAGAAATGCCGTTTCAGTACAAGTTTTAAATGAACCAACAAGAAGAAGACGTAGAAGAAGATTGAGATGA 1281 0.4239 MSMEPMDQTSSSTSVVAFDSVLEELEVAEENIRNRIVHLEAITSRARQRQRLARVQTPIQITNFTGEAAIADGVQVEEGRVEVEQNVVEERVVESVKGGKRKSAHLVAKALGIEEIDDGKMEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYVYSKAKECPVCKGEVTESGIIPIYGNGNGGGDRQMEMKEAGLRVPPRPKAPRVESLRQKLISRGVSSSSSIVQSLRRFHNRIGGFGEQVQLESSNTTADRNNGLPTLLDQSRTQTDDNNQHAGSEQVSRLLGQGASSFSTLSTALNSAMDSAERLVQDLESYIHGRRIGGSREQHPRVVNRSSNGSESRAQDVVAVTNSAAAAASVSPLSSNVDNIAAIGSETQTTDRNVQISPPDPSSSNGRRRNAVSVQVLNEPTRRRRRRRLR* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1056 426 SMART ring_2 131 171 IPR001841 -
Tpr4g1056 426 MobiDBLite consensus disorder prediction 381 426 - -
Tpr4g1056 426 ProSiteProfiles Zinc finger RING-type profile. 131 172 IPR001841 -
Tpr4g1056 426 MobiDBLite consensus disorder prediction 326 350 - -
Tpr4g1056 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 361 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr4g1056 426 Pfam Zinc finger, C3HC4 type (RING finger) 130 177 - -
Tpr4g1056 426 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 9 361 - -
Tpr4g1056 426 MobiDBLite consensus disorder prediction 336 350 - -
Tpr4g1056 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 212 IPR013083 -
Tpr4g1056 426 CDD RING-HC_AtRMA_like 129 173 - -
Tpr4g1056 426 Coils Coil 22 42 - -
Tpr4g1056 426 MobiDBLite consensus disorder prediction 381 413 - -
Tpr4g1056 426 SUPERFAMILY RING/U-box 127 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1056 Tpr-Chr4 10235286 10237459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1056 86 406 C3H Transcription Factor Family AT3G58030 32.231 1.97e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1056 K10666 - gmx:100793230 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1056 4 10235286 10237459 Tpr4g1056 4 10235286 10237459 ECH