Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1054 ATGTTTCTAAGGGCAAGTACTGGAGACAGTTACCGTGTTAGCGCATCTAGTACGCCTGGCAATTCAAGTGGAGGATATGATGGAGGTGATATTGAATCACGATGTGATGTTTACATATGGGGAGAGGTTTTTGCAGACGGATTTCCTTCTAAGACAGATGTGTTGATCCCTAAGCTCTTAGAGTCAAAACTTTATCTTGATGTTCATAACATTGCATGCGGTGCGCATCACGTTGCTATAGTAAACAAGAGAGGAGAGATTTTCACTTGGGGAAAAGAATCTGGTGGAAGACTCGGTCATGGAACTGATAAAGATTTTGACAAGCCTAATCTAGTTGAGTTTCTTGAAGATGTTATTTTGGATATTGTTGCATGTGGAGAGTTTCATACATGTGCTGTGTCTAAATCTGACGACTTTTTCACCTGGGGTGATGGTTCACATAATGTTGGACTTCTTGGACATGGTAATGAGGCTAGTCACTGGATACCAAAGAGTGTCAATGGCTTTTTGGATGGACTTCAAGTCGTATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCAAATGGAAAACTGTTTACCTTTGGTGATGGAACATTTGGTGTGTTAGGCCATGGTGATCAAGAGAGTGTATTCCATCCAAAGGAAGTACAATTATTAAGTGGACTGAAGACTATGAAGGTTGCTTGCGGAGTATGGCACACTGCAGCTATTGTTGAGGTTGTTTTTCAATCTGATTCAAATGTTACATCATGGAAACTCTTCACATGGGGCGACGGCGACAAATATCAACTAGGCCATGGAAACAAGGAAACATATCTGAAACCAACGCGTGTCTTGCCACTTATTGAATATAATTTCCAGCAGATAGCATGTGGACACACCATGACTGTTGCTCTCACTACATCTGGTCATGTATTTGCAATGGGAAGCACGGAAAATGGTCAATTAGGAAATCCAAATTCTGCTGGAAAAGTACCTACTTTAGTTCAAGATAAGTTGCTTGGTGAATTCGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTTTTGACTTCAAAAAAAGAACTATATACATGGGGAAAAGGTTCTAACGGAAGACTAGGACACGGTGACAAAGATGATAAAAAATCTCCTACACTTGTGGTAGCCTTGAAAGACAGGCATATAAAATATATCTCGTGTGGTTCAAACTTTACGTCTTGTATATGCATCCCTAAATCGGTCACTGGAACTGACCAATCTGTTTGCTTTGGTTGTAGACAAGCATTTGGCATAACAAGAAAAAGGCACAATTGTTATAATTGTGGATTGGTTTTCTGCCATAGTTGTAGTTCTAACAAGGCATTCAAAGCTGCACTGGCTCCAACATTTGAAAAGCCTCACCGTGTATGTGATACTTGTTTTACTAAGCTTAAAGTTGACATCAATGATCCTTCACAATTTGATGGAAAAACTGCTCCTTCTCATTGTTACACAACTGGTAGGGAAGGATTAGACCAAAGTATTTTAAGGTCTACAAAAACTCTCTTCTCTTCTATAACTGAACCAGTAAAATACCATGAAATAAGGAATAATAAGCCTGGAACTGAATATGGTACTACTTTCATAAGAGCTTCTTTAGTTCCATCTCTTTTGCAATTGAAAGATATTGCATTTCCAAGTTCATTCAGTTCTGATCAAAGTGTTTTGAAGCCTTCTACACCCCCTAGTTCATCACAAAGTCCCGCATCCCCACACACGTGTAGATCAAGCCTTCCACCACCTTCTGACAATCCGAAAATTTCTGGTGTTCTTATCAATAGTTTGAGAAGAGCAAATTATGTTTTGATCCAACGAGTCTCGGATTTGCAGCGACAAATTCGAGGTTTGAAGCAGATAAGTGGCGTGAAAGATGTGCAACTTCAGAGGCTTCATAAAAAGGCCAAGGAAGCTATTGCCTGGGCTGCAGTGGAATCTTCTTGTCATACAGAATCAAAAGAATTTATTGAATCTACTAAACATCAGTTGAAGGAAGTGACTGAGAAGCTACCAGTAGATGTTCCAGAAACTAATATCTTGAGTACTATACAAACTCGAGCTGAAGATTTTCTAAAAGAAATTTCAGAATCTAAAACATCAGGGTTGGAGTCCAAGCAACAAGAAGCACATGCCATATCTGCTACAGACAGTGACTCTTGTCTAGAAAAGTTAGTAGAGTCTTTGCAACAGAATGCACCTGATATATCTACCCCGCCTAGTGAAACTTTTGAACTTCAACATCATAGACTAGAACAAAATGCTGATGTTTTAGGAGATGACCGTTGTCAAGATGAAGGAAATATCCTTGACGAAATTAACAAACCAACGTTGGAGTCAAAGCAACAAAATTCACATGATATATCTACCCCGCAAAGTGGAGCTTTTGAACCGCAAGATCATAGACTAGAACAAAATGCTGATGTTTTAGGAGATGACGGTTGTCAAGATGAAGGAAATATCCTTGACGAAATTAACAAACCAACATTGGAGTCAACGCAACAAAATTCACATGATATATCTACCCCGCATAGTGGAACTTTTGAACAAGAAGATCATAAACTAGAACAAAATGCTGAAGCTTTAGGAGATGACTGTTGTCAAGATGAAGGAAATATTCTTGATGAAATTAACAAACCAACATTGGAGTCAAAGCAACAAAATTCACATGATATATCTACCCCGCATAATGGAACTATTGAACTGCAAGATCATAGACTAGAACAAAATGGTGATGTTTTAGCAGATGACCGTTGTCAAGATGAAGGAAATATCCTTGATGAAATTAACAAACCAACATTGGAGTCAAAGCAACAAAATTCATCTGATATAACTACCTCAGATAGTGACACTTCTAAACTACAAGTACACATACATGAAAAAATTGATGAGACTGCAAGGGTTGATCAATCTGAGGATGGAATAAATGTACGGCAAGAAAGTAATGGATCGACAATATCTAGTGTTGGAGAAAGGATATCACCCCAAAACTCAGCAAATGGTTCAATATCACCACCGGAGTACTGTTCAAGACATGAGACACTACAAGAAACACAAGTCTTTGAAAAATTTGAGTCTGGTGTTTATGTGTTAGTCGTGCTACGGGATGATGGAATCAAAATTTTTAAAAGAGTTAAATTCAGTAAGCGAAGGTTCAATGAAAGACAAGCAGAAGAATGGTGGAGCCATAACAAAGGTAGGGTTCTTAGCAAATACTGTCCAATCCATCAAAAGTTAAATGAACCGTGTATTAACATTACACCAAATGTTAAAGAAAATATTGAGTCATCTACTTCTTAA 3327 0.385 MFLRASTGDSYRVSASSTPGNSSGGYDGGDIESRCDVYIWGEVFADGFPSKTDVLIPKLLESKLYLDVHNIACGAHHVAIVNKRGEIFTWGKESGGRLGHGTDKDFDKPNLVEFLEDVILDIVACGEFHTCAVSKSDDFFTWGDGSHNVGLLGHGNEASHWIPKSVNGFLDGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVFHPKEVQLLSGLKTMKVACGVWHTAAIVEVVFQSDSNVTSWKLFTWGDGDKYQLGHGNKETYLKPTRVLPLIEYNFQQIACGHTMTVALTTSGHVFAMGSTENGQLGNPNSAGKVPTLVQDKLLGEFVEEISCGAHHVAVLTSKKELYTWGKGSNGRLGHGDKDDKKSPTLVVALKDRHIKYISCGSNFTSCICIPKSVTGTDQSVCFGCRQAFGITRKRHNCYNCGLVFCHSCSSNKAFKAALAPTFEKPHRVCDTCFTKLKVDINDPSQFDGKTAPSHCYTTGREGLDQSILRSTKTLFSSITEPVKYHEIRNNKPGTEYGTTFIRASLVPSLLQLKDIAFPSSFSSDQSVLKPSTPPSSSQSPASPHTCRSSLPPPSDNPKISGVLINSLRRANYVLIQRVSDLQRQIRGLKQISGVKDVQLQRLHKKAKEAIAWAAVESSCHTESKEFIESTKHQLKEVTEKLPVDVPETNILSTIQTRAEDFLKEISESKTSGLESKQQEAHAISATDSDSCLEKLVESLQQNAPDISTPPSETFELQHHRLEQNADVLGDDRCQDEGNILDEINKPTLESKQQNSHDISTPQSGAFEPQDHRLEQNADVLGDDGCQDEGNILDEINKPTLESTQQNSHDISTPHSGTFEQEDHKLEQNAEALGDDCCQDEGNILDEINKPTLESKQQNSHDISTPHNGTIELQDHRLEQNGDVLADDRCQDEGNILDEINKPTLESKQQNSSDITTSDSDTSKLQVHIHEKIDETARVDQSEDGINVRQESNGSTISSVGERISPQNSANGSISPPEYCSRHETLQETQVFEKFESGVYVLVVLRDDGIKIFKRVKFSKRRFNERQAEEWWSHNKGRVLSKYCPIHQKLNEPCINITPNVKENIESSTS* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 975 1012 - -
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 784 805 - -
Tpr4g1054 1108 SUPERFAMILY FYVE/PHD zinc finger 413 477 IPR011011 -
Tpr4g1054 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Tpr4g1054 1108 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Tpr4g1054 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Tpr4g1054 1108 Pfam Transcription factor regulating root and shoot growth via Pin3 1027 1081 IPR013591 -
Tpr4g1054 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Tpr4g1054 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Tpr4g1054 1108 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 845 - -
Tpr4g1054 1108 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 843 1087 - -
Tpr4g1054 1108 Gene3D - 255 411 IPR009091 -
Tpr4g1054 1108 SUPERFAMILY RCC1/BLIP-II 34 410 IPR009091 -
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 936 962 - -
Tpr4g1054 1108 ProSiteProfiles BRX domain profile. 1027 1082 IPR013591 -
Tpr4g1054 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Tpr4g1054 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 1 25 - -
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 9 24 - -
Tpr4g1054 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 484 IPR013083 -
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 565 594 - -
Tpr4g1054 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 360 406 IPR000408 -
Tpr4g1054 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Tpr4g1054 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Tpr4g1054 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Tpr4g1054 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 85 133 IPR000408 -
Tpr4g1054 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 783 807 - -
Tpr4g1054 1108 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 2 845 - -
Tpr4g1054 1108 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 843 1087 - -
Tpr4g1054 1108 SMART fyve_4 409 477 IPR000306 GO:0046872
Tpr4g1054 1108 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Tpr4g1054 1108 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Tpr4g1054 1108 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Tpr4g1054 1108 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Tpr4g1054 1108 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Tpr4g1054 1108 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Tpr4g1054 1108 Gene3D - 7 254 IPR009091 -
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 940 961 - -
Tpr4g1054 1108 MobiDBLite consensus disorder prediction 984 1012 - -
Tpr4g1054 1108 Pfam FYVE zinc finger 416 475 IPR000306 GO:0046872
Tpr4g1054 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1054 Tpr-Chr4 10222247 10231722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1054 1014 1081 Major Intrinsic Protein MIP AT1G31880 33.824 3.20e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1054 - - mtr:MTR_4g029410 1385.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1054 4 10222247 10231722 Tpr6g2178 6 23710584 23712009 PCT