Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1039 ATGAAAAGTCATCATCATAATCTTCTTCATTCTTCCTTCACTTCTAATAATAATTCCATCATCCAACCCTTAAACTCAAATAATCAATTAACAAAAAAAGCTATGGCAATATCACCCCAAACATTCCCAACAACTAAACGACCACCATCAGAAACGTCGTCGTTTATTACTCCAAACCTAACAAATTTCAATCTTCTTCACTCTCTTTTACACCTCACATATCAAATATGTTCATTAAATGCAGCACCTTGGTGTCGTTTTCTCTTAAACAAAATTTCCTCTTCAACAATCCATAAAACGCATCTTTTAGGTGTCGTTTTCGATGACCTAATTCGCAATTCAACTACAATTACAATTTCGAATTCATTTTCAATTTCAACTAATTCTTTCGATTTGTGTCTTGAAGAAATGTATATTGTGTTGCATAGGATTAAGAAATTGATTGAAGATTGTTCTAATGGAAGTAAGTTTTCAGTTTTGATGCAAATTGAAACTGTTGCTGATAATTTCAATAAACTTACCGGTGAATTATCGACGCTTCTTGATGTTTTTCCGATTCATGAAATGAACTTAAACGACGACGTTTTGGAGCTTATTGTTTTGATCAGAAAACAGTGTTCAGAATCGAAGAAGAATAAGCTTGGAGAAGAACAGATTAATCTCAGAAACGACGTCGTTTTTGTGCTGGAAGGAATCAAGAGAGAGATTGTTCCGAATGAAGAAAAGCTAGCTTCGATTTTCGAGAAATTAGAGATTCGTGATTCTTCAAGTTGCAGAAGTGAAATTGAGAATCTGCAAGAAGAAATTCAGAATCGAAACGAAGAACAATCGAAATCTGAGATCGTTGCTTTGATCGGACTCGTTCGTTATGCGAAGTGTGTTCTCTTCGGAGCATCAACGCCGTCGTCGAGAAATGAGACTCTACGGCGGAATCAGTCGTTGGAGATTGTTGTTCCGGCGGATTACCGGTGTCCGATAAGTCTTGAACTGATGCGTGATCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTGGCTCTATCAAATTATGGATGGATTCTGGACATAACACGTGTCCTAAAACAGGTCAAACCCTGGCCCACACGGATTTAATACCTAACCATGCTTTGAGAAATATGATAGCTTTGTGGTGTAAAGAACAGAGAATTCCGTTTGAAGGTGAAACGGTTACTGTTAAAGTTAACGGTTGTGTGATGAATAAAACAGCTTTGGAAGCAACGAGAATGACGGTGACGTTTTTAGTCAACAAGTTGACTAATGGTGGTTTAGTTTCAGAGTCTTGTGGTATCGAAGAAACGAATGCGGTTGTGTATGAGCTTCGGGTGTTGGCGAAAATAGATTCGGAGAGCCGAGCCTGTATTGCCGAGGCCGGAGCTATAGAGATTTTGGTTAGGTTTTTAAGTTATGAAGTTGGTTTGCAACACCCGAGCCTACAGATTAATGCCGTGACAACGATTTTGAATCTTTCGATACTTGAAGCGAATAAGACAAGGATAATGGAAATTGACGGCGTGTTAAATGGTGTAGCGGAGGTTTTACGATCGGGCGCCACGTGGGAGGCGAAAGCAAATGCGGCTGCTACGGTGTTTAGTTTAACCGGAGTGGTTGCTTTTAGAAAGCGGTTAGGGAGGAAGACACGTGTCGTGAGTGGATTGGTTGAGTTGGCAAAGTGTGGGCCCGAGGGTGCAAAAAGGGATGCGCTTGCGGCAATTTTGAATTTAGCAGCCGACCGTGAGACGGTGGCGAGGTTGGTTGAGAGTGGCGCGGTGGAAATGACGGCAGGGATTATGGCAGTGATGCCCGAGGAGGCGGTGACGATACTTGAAGCAGTGGTGAAGCGTGGAGGATTGGTAGCTGTTGCGGCGGCTTTTGTGGGGATAAAGAAATTGGGGACGGTTTTGAGGGAGGGATCAGAGAGGGCAAGAGAGAGTGCCGCAGCGACACTTGTGACAATGTGTAGGAAAGGTGGATCAGAGATTGTGGCAGAACTAGCTGGGATTCATGGTGTTGAAAGGGTGATTTGGGAGTTGATGGCAGTGGGGAGTGTGAGAGGCAGGAGGAAGGCGGCGACATTGTTAAGGATTTTACGGCGGTGGGCAGCGGGTTTAGACGGAGGCGAAACAGAAGGATTTACATCAACAAACACTTTTGTTAGTACGTCAACTACTGTGGTTGTTCCAACTCCAACTTCATTAGCACAGTAA 2226 0.4286 MKSHHHNLLHSSFTSNNNSIIQPLNSNNQLTKKAMAISPQTFPTTKRPPSETSSFITPNLTNFNLLHSLLHLTYQICSLNAAPWCRFLLNKISSSTIHKTHLLGVVFDDLIRNSTTITISNSFSISTNSFDLCLEEMYIVLHRIKKLIEDCSNGSKFSVLMQIETVADNFNKLTGELSTLLDVFPIHEMNLNDDVLELIVLIRKQCSESKKNKLGEEQINLRNDVVFVLEGIKREIVPNEEKLASIFEKLEIRDSSSCRSEIENLQEEIQNRNEEQSKSEIVALIGLVRYAKCVLFGASTPSSRNETLRRNQSLEIVVPADYRCPISLELMRDPVVVATGQTYDRGSIKLWMDSGHNTCPKTGQTLAHTDLIPNHALRNMIALWCKEQRIPFEGETVTVKVNGCVMNKTALEATRMTVTFLVNKLTNGGLVSESCGIEETNAVVYELRVLAKIDSESRACIAEAGAIEILVRFLSYEVGLQHPSLQINAVTTILNLSILEANKTRIMEIDGVLNGVAEVLRSGATWEAKANAAATVFSLTGVVAFRKRLGRKTRVVSGLVELAKCGPEGAKRDALAAILNLAADRETVARLVESGAVEMTAGIMAVMPEEAVTILEAVVKRGGLVAVAAAFVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAGIHGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFTSTNTFVSTSTTVVVPTPTSLAQ* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1039 741 ProSiteProfiles U-box domain profile. 317 391 IPR003613 GO:0004842|GO:0016567
Tpr4g1039 741 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 48 721 - -
Tpr4g1039 741 CDD RING-Ubox_PUB 322 364 IPR045210 -
Tpr4g1039 741 SMART arm_5 454 498 IPR000225 GO:0005515
Tpr4g1039 741 Pfam U-box domain 318 389 IPR003613 GO:0004842|GO:0016567
Tpr4g1039 741 Gene3D - 417 632 IPR011989 -
Tpr4g1039 741 SMART Ubox_2 321 384 IPR003613 GO:0004842|GO:0016567
Tpr4g1039 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Tpr4g1039 741 SUPERFAMILY RING/U-box 314 391 - -
Tpr4g1039 741 Coils Coil 255 282 - -
Tpr4g1039 741 PANTHER U BOX DOMAIN-CONTAINING 48 721 - -
Tpr4g1039 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 394 IPR013083 -
Tpr4g1039 741 SUPERFAMILY ARM repeat 441 703 IPR016024 -
Tpr4g1039 741 Gene3D - 112 187 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1039 Tpr-Chr4 10072085 10074644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1039 43 739 U-box Gene Family AT5G01830 53.333 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1039 - - cam:101506886 1164.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1039 4 10072085 10074644 Tpr4g1039 4 10072085 10074644 ECH