Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1025 ATGGAGTCAAGGTGTTGCATGAACGTGTTGTGTGGTACATCTACGTCGATTCGGTGGCGTAAAGGTTGGCTTCTTCGATCCGGTGAATTTTCCGATCTATGTGATAAGTGCGGTTCTGCTTATGATCAATCGGCATTTTGTGATATTTTCCATGCAAAAGATTCTGGTTGGAGAGAGTGTACTTCGTGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCGAAATCACAGCTTGAAATACTTGATACTGGTGGTGTAAGCTGCATAACCTGCACAAGTAATTCAGGACTTCAACCAATTGCTGGTAATGAAAAGCCTAATGAATCAGAGACAGCAAAGGTAAAACATGTCAGTGTGCAGCAATACTTATCTCTGGCTAACCAATTAAATGCAAGGGGTATGCAAGTAGGGAATTATACAGAAAATGATGGGCTGAGGTGTTGGCTCAAACCTCACAATGTTAATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTAGTATCACAATTTCATCGTGAGTCAAATGGATCGTCTAGGACTGCCAAAGGAGAGAATTATAAGGCAGGCGACATGCAAGATATATATGAATCACTGACACAGACAAATTTGAGTATGACCCTTGCCGCTCCTTTGGTAAATTCGAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCAGCTCCGCTTCTATTGGCATCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGCAAATGCAGGCATGGTGTCTCAGGTTCGTATAGCAAGGCCTCCCGCCGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGAGGTATGTTCAAGCTCAAATTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTCTCCCCAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGAATCCAGGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGCGTAACGCCCTGTATCCAGTCTATGCAACTGCAAGCTGGGGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATAAGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATTTACCTATATTAAGTGGTTATTCTGGCCTTCTTCAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGCACTGTCTAAAAAGTGGAACTCAGTTGGTGGTGACATGGATTGGCATAATGTAGAAATGCCCGAAAGCAGGAAAAGAGATGCCTTGTCTTTGCCACCCGTGCTGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGATCACTTATTTGAAGAATATGAAGAACCTCCTGTCTTCGGAAAGAAGAGTATTTTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTTAAAATGGCGGAAGTTACCAGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGAGAACTGGATAATCTTTTGAGAATGAACAAGGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTCTGGAACGCGAATCTCCTGGTCTTGATGCTTTGGCAAATGCTGCCGTACTTGGAGATGATGCAAGTGAATCTGGTACGACACCAGTCATGACCACTACAAAACATCCTCGTCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGAAAACACAAACCTACGTGCACTTGTAACGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAACGTGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATATAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTAATGGTTCAGAGAATGAAGCAAGGGTGCCAAATGAGTTAGATTCAAGGAGTCAAGACCAAGTGGCTGAAGCTGCAACGGGACAATTAGACTTGAATTGCCAACCGGACCGGGATGACGTGCAATCTGGACCAAACACTCTAAGCATGATGACTCTACTTGAAGAAGCAAATCTTCCATTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAAACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGCAATACTGCTTCTGTAGTTCATGAACAGGAAGGCAGTCCTGAAGAAAACAGCAATTCAGTTTCTTGA 2715 0.4354 MESRCCMNVLCGTSTSIRWRKGWLLRSGEFSDLCDKCGSAYDQSAFCDIFHAKDSGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCTSNSGLQPIAGNEKPNESETAKVKHVSVQQYLSLANQLNARGMQVGNYTENDGLRCWLKPHNVNMDGPSTEIKPEVLPSVGEFGSTLVSQFHRESNGSSRTAKGENYKAGDMQDIYESLTQTNLSMTLAAPLVNSNPFHNVLVDEREQSKMSAPLLLASRSRHLLPKPPRPTLSPGLEANAGMVSQVRIARPPAEGRGRNQLLPRYWPRITDQELQQISGEVCSSSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNKPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSVGGDMDWHNVEMPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSNGINEQWTQCDSCLKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNKEFKKQRLAAASQRPALERESPGLDALANAAVLGDDASESGTTPVMTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSYRTKDESEVDSTSRHLTPVNGSENEARVPNELDSRSQDQVAEAATGQLDLNCQPDRDDVQSGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCNTASVVHEQEGSPEENSNSVS* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1025 904 Pfam CW-type Zinc Finger 595 637 IPR011124 GO:0008270
Tpr4g1025 904 MobiDBLite consensus disorder prediction 743 820 - -
Tpr4g1025 904 ProSiteProfiles Zinc finger CW-type profile. 590 640 IPR011124 GO:0008270
Tpr4g1025 904 ProSiteProfiles B3 DNA-binding domain profile. 325 426 IPR003340 GO:0003677
Tpr4g1025 904 CDD B3_DNA 323 424 IPR003340 GO:0003677
Tpr4g1025 904 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 863 - -
Tpr4g1025 904 SMART B3_2 325 425 IPR003340 GO:0003677
Tpr4g1025 904 Pfam B3 DNA binding domain 325 424 IPR003340 GO:0003677
Tpr4g1025 904 Gene3D - 593 649 - -
Tpr4g1025 904 Gene3D - 299 430 IPR015300 -
Tpr4g1025 904 MobiDBLite consensus disorder prediction 858 904 - -
Tpr4g1025 904 SUPERFAMILY DNA-binding pseudobarrel domain 322 424 IPR015300 -
Tpr4g1025 904 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1025 Tpr-Chr4 9875768 9883537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1025 1 886 B3 DNA Binding Superfamily AT4G32010 48.655 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g1025 B3 1.4e-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1025 4 9875768 9883537 Tpr4g1025 4 9875768 9883537 ECH