LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g1025	ATGGAGTCAAGGTGTTGCATGAACGTGTTGTGTGGTACATCTACGTCGATTCGGTGGCGTAAAGGTTGGCTTCTTCGATCCGGTGAATTTTCCGATCTATGTGATAAGTGCGGTTCTGCTTATGATCAATCGGCATTTTGTGATATTTTCCATGCAAAAGATTCTGGTTGGAGAGAGTGTACTTCGTGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCGAAATCACAGCTTGAAATACTTGATACTGGTGGTGTAAGCTGCATAACCTGCACAAGTAATTCAGGACTTCAACCAATTGCTGGTAATGAAAAGCCTAATGAATCAGAGACAGCAAAGGTAAAACATGTCAGTGTGCAGCAATACTTATCTCTGGCTAACCAATTAAATGCAAGGGGTATGCAAGTAGGGAATTATACAGAAAATGATGGGCTGAGGTGTTGGCTCAAACCTCACAATGTTAATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTAGTATCACAATTTCATCGTGAGTCAAATGGATCGTCTAGGACTGCCAAAGGAGAGAATTATAAGGCAGGCGACATGCAAGATATATATGAATCACTGACACAGACAAATTTGAGTATGACCCTTGCCGCTCCTTTGGTAAATTCGAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCAGCTCCGCTTCTATTGGCATCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGCAAATGCAGGCATGGTGTCTCAGGTTCGTATAGCAAGGCCTCCCGCCGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGAGGTATGTTCAAGCTCAAATTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTCTCCCCAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGAATCCAGGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGCGTAACGCCCTGTATCCAGTCTATGCAACTGCAAGCTGGGGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATAAGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATTTACCTATATTAAGTGGTTATTCTGGCCTTCTTCAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGCACTGTCTAAAAAGTGGAACTCAGTTGGTGGTGACATGGATTGGCATAATGTAGAAATGCCCGAAAGCAGGAAAAGAGATGCCTTGTCTTTGCCACCCGTGCTGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGATCACTTATTTGAAGAATATGAAGAACCTCCTGTCTTCGGAAAGAAGAGTATTTTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTTAAAATGGCGGAAGTTACCAGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGAGAACTGGATAATCTTTTGAGAATGAACAAGGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTCTGGAACGCGAATCTCCTGGTCTTGATGCTTTGGCAAATGCTGCCGTACTTGGAGATGATGCAAGTGAATCTGGTACGACACCAGTCATGACCACTACAAAACATCCTCGTCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGAAAACACAAACCTACGTGCACTTGTAACGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAACGTGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATATAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTAATGGTTCAGAGAATGAAGCAAGGGTGCCAAATGAGTTAGATTCAAGGAGTCAAGACCAAGTGGCTGAAGCTGCAACGGGACAATTAGACTTGAATTGCCAACCGGACCGGGATGACGTGCAATCTGGACCAAACACTCTAAGCATGATGACTCTACTTGAAGAAGCAAATCTTCCATTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAAACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGCAATACTGCTTCTGTAGTTCATGAACAGGAAGGCAGTCCTGAAGAAAACAGCAATTCAGTTTCTTGA	2715	0.4354	MESRCCMNVLCGTSTSIRWRKGWLLRSGEFSDLCDKCGSAYDQSAFCDIFHAKDSGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCTSNSGLQPIAGNEKPNESETAKVKHVSVQQYLSLANQLNARGMQVGNYTENDGLRCWLKPHNVNMDGPSTEIKPEVLPSVGEFGSTLVSQFHRESNGSSRTAKGENYKAGDMQDIYESLTQTNLSMTLAAPLVNSNPFHNVLVDEREQSKMSAPLLLASRSRHLLPKPPRPTLSPGLEANAGMVSQVRIARPPAEGRGRNQLLPRYWPRITDQELQQISGEVCSSSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNKPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSVGGDMDWHNVEMPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSNGINEQWTQCDSCLKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNKEFKKQRLAAASQRPALERESPGLDALANAAVLGDDASESGTTPVMTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSYRTKDESEVDSTSRHLTPVNGSENEARVPNELDSRSQDQVAEAATGQLDLNCQPDRDDVQSGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCNTASVVHEQEGSPEENSNSVS*	905

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g1025	904	Pfam	CW-type Zinc Finger	595	637	IPR011124	GO:0008270
	Tpr4g1025	904	MobiDBLite	consensus disorder prediction	743	820	-	-
	Tpr4g1025	904	ProSiteProfiles	Zinc finger CW-type profile.	590	640	IPR011124	GO:0008270
	Tpr4g1025	904	ProSiteProfiles	B3 DNA-binding domain profile.	325	426	IPR003340	GO:0003677
	Tpr4g1025	904	CDD	B3_DNA	323	424	IPR003340	GO:0003677
	Tpr4g1025	904	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1	3	863	-	-
	Tpr4g1025	904	SMART	B3_2	325	425	IPR003340	GO:0003677
	Tpr4g1025	904	Pfam	B3 DNA binding domain	325	424	IPR003340	GO:0003677
	Tpr4g1025	904	Gene3D	-	593	649	-	-
	Tpr4g1025	904	Gene3D	-	299	430	IPR015300	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g1025	Tpr-Chr4	9875768	9883537	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g1025	1	886	B3 DNA Binding Superfamily	AT4G32010	48.655	0.0	794

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Tpr4g1025		B3	1.4e-15	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g1025	-		-	gmx:100778833	1589.7

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr4g1025	4	9875768	9883537	Tpr4g1025	4	9875768	9883537	ECH

Showing 1 to 1 of 1 entries