Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1023 ATGCAAGATCAATTCATCATCATCCTATGTTTGTTTCTTGTTCTTTTCAATCCTTTCCTAGTGATCTCACTATACCAACCTTTCAATGAAGACATGTTAGGGTTGATTGTGTTCAAAGCAGGTTTAGAAGATCCAAAAAACAAACTTTCTTCTTGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGTGTCAAATGTGACCCCACAACAAATAGGGTAGCTTCTCTTGTTCTTGATGGATTCTCTCTTTCAGGACATATTGGTAAAAGCCTTATGAAATTACAGTTCCTTCAAATTCTATCACTTTCCAAGAACAATTTCACAGGGGAAATAAACCATGATCTTCTTGTTACTCTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAATAGTTTGTTCGGAACAATTCCGGATGAACTTTTTCGACAATGTTGGTCGTTAAGAGTTTTATCTCTCGCGAAAAACAATCTCTCGGGTACAATTCCTGACTCATTGAGTTCATGCTTCTCGTTAGCAAGTTTGAACTTTTCGTCTAACCGATTAAGTGGTGAGTTACATTCTGGAATGTGGTTTTTGAAGGAGCTTCAATCGCTTGATCTCTCGAATAATTTGCTTGATGGAGAGATTCCTGAAGGAATTCAAAATCTATATGATTTGAGAGAGTTAAGGTTAAGGAGGAACTTTTTCACCGGTAGGATACCGGAGAGTATAGGAAACTGTTTACTTTTGAAGTTGATCGATTTCGGTGATAATCTTCTAACCGATGAAATTCCGGAGTCGATACAAAGACTCACCTCAAGCACATTTTTAAGTTTGCAAGGGAATTCTCTCAATGGAAGTATTCCACACTGGATAATAGAATTGAACAATCTTGAGATATTGGATCTTTCTTCTAATAGATTTTTCGGTTTGATTCCAAATGGTATTGGTGGTCTTAAAAGCTTGCAAGTGTTGAATTTTTCCAACAACAATATCTTTGGGTCTATTCCAGTGAGTATAAGAGAGCTTAAATCTTTGTATATACTTGATTTGAGTGATAACAAGATTAATGGAAGCATTCCTTGTGAAATAGAAGGAGCAATTTCACTTAATGAATTGAGGTTACAAAGAAATTTGTTAGGTGGAAGAATTCCAGTCCAAATTGCAAAATGTTCAGCACTCACATCTATGAATCTTGCACACAACAAGCTTATTGGTTCAATCCCTTCATCAATTGCAGACCTAACAAATCTTCAACATGCAGATTTTTCATGGAACAAACTCACTGGAACTTTACCTAAAAAGCTCACAAATCTTACACATCTTTCCTCATTCAATGTTTCCTATAACAATCTTCAAGGTGAATTACCAATTGGTGGATTCTTCAAAAAAATCTCTGCTTCATTTGTTTCTGGAAATCCATTGTTATGTGGTTCTGTTCTTAACCACTCTTGTTCATCTTATCATCCAAAACCTATTGTCTTAAACCCTAATTCAAATTACAACAATTCAAGAACTTCATTACAAAACCAACATCATCATCATCATAAGATAATGCTTAGTATTTCTGTTTTTATTGCTATTGGTGCAGCTATTTCTATTGTTGTTGGTGTTATTGTTGTTAGTTTTTTGAATATTCATGTTAGGTCTTCAAATTCACATTCTAATTTTCCATTTGGATTACCTGATGGGAAGGACTATAGATCTTCGCCGGAAAAAGATCCGAAATGTGGAAAAGTTGTGATGTTTAATGGTGATGTTGAATTTACCGATGAGCCGAATAATCTTCTTAAAGAAGGTAATGAAATCGGCCGCGGTGGATTTGGAATTGTTTATTGTGTTGTTCTTCGAGATCAGAAGTCTGTTGCAATCAAGAAGCTTATAGGTTCGAGTTTGACAAAGTTGCACGATGATTTTGAGGAAGAAGTTCAAAAACTTGGAAAAATTAGGCATCAAAATCTTGTGGCAATTGACGGGTATTATTGGAATTCAACATTTCAACTAATTATTTATGAGTACTTTTCTAGAGGGAATTTGCATAAGCTTCTTCATGATGATAATAGCAAAATTGTGTTTTCTTGGAGTGCAAGGTTCAAGGTTATTTTAGGAATTGCAAAAGGGTTGGCCTATTTACACCAAATGAACATAATCCATTATAATATGAAATCTACCAATGTTTTCATTGATTTTTGTGATGAACCAAAAATTGGAGATTTTGGTTTGGTGAATCTATTGCCAACTTTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACACGGCTCCTGAGTTTGCTTGTCGAACGGTTAACATAACCGAAAAATGCGACGTATATGGTTTTGGAATTTTGGTTCTAGAAATTGTGAGCGGAAAAAGACCCGTGGAATATATGGATGATGATGTTGTTGTTCTATGTGACATGGTTAGAAGTTCATTGGAGGATGGAAAAGTTGAGCAATGTGTTGATGAGAAACTTGTTGGTAATTTTTCGCTCGAGGAAGCGATTCCTATGATTAAATTAGGGTTGGTTTGTTCATCACATGTACCATCAAATCGTCCGAATATGGCTGAGGTTGTTAACATATTAGAGACGATTGAATGCTCTTCGGAAGGACAACAAGAGGAATTACAATGA 2628 0.3531 MQDQFIIILCLFLVLFNPFLVISLYQPFNEDMLGLIVFKAGLEDPKNKLSSWNEDDYSPCNWEGVKCDPTTNRVASLVLDGFSLSGHIGKSLMKLQFLQILSLSKNNFTGEINHDLLVTLWNLKVVDLSENSLFGTIPDELFRQCWSLRVLSLAKNNLSGTIPDSLSSCFSLASLNFSSNRLSGELHSGMWFLKELQSLDLSNNLLDGEIPEGIQNLYDLRELRLRRNFFTGRIPESIGNCLLLKLIDFGDNLLTDEIPESIQRLTSSTFLSLQGNSLNGSIPHWIIELNNLEILDLSSNRFFGLIPNGIGGLKSLQVLNFSNNNIFGSIPVSIRELKSLYILDLSDNKINGSIPCEIEGAISLNELRLQRNLLGGRIPVQIAKCSALTSMNLAHNKLIGSIPSSIADLTNLQHADFSWNKLTGTLPKKLTNLTHLSSFNVSYNNLQGELPIGGFFKKISASFVSGNPLLCGSVLNHSCSSYHPKPIVLNPNSNYNNSRTSLQNQHHHHHKIMLSISVFIAIGAAISIVVGVIVVSFLNIHVRSSNSHSNFPFGLPDGKDYRSSPEKDPKCGKVVMFNGDVEFTDEPNNLLKEGNEIGRGGFGIVYCVVLRDQKSVAIKKLIGSSLTKLHDDFEEEVQKLGKIRHQNLVAIDGYYWNSTFQLIIYEYFSRGNLHKLLHDDNSKIVFSWSARFKVILGIAKGLAYLHQMNIIHYNMKSTNVFIDFCDEPKIGDFGLVNLLPTLDHCVLSSKIQSALGYTAPEFACRTVNITEKCDVYGFGILVLEIVSGKRPVEYMDDDVVVLCDMVRSSLEDGKVEQCVDEKLVGNFSLEEAIPMIKLGLVCSSHVPSNRPNMAEVVNILETIECSSEGQQEELQ* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1023 875 ProSiteProfiles Protein kinase domain profile. 591 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1023 875 SUPERFAMILY L domain-like 45 235 - -
Tpr4g1023 875 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Tpr4g1023 875 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Tpr4g1023 875 Gene3D Ribonuclease Inhibitor 26 93 IPR032675 -
Tpr4g1023 875 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Tpr4g1023 875 PRINTS Leucine-rich repeat signature 196 209 - -
Tpr4g1023 875 PRINTS Leucine-rich repeat signature 289 302 - -
Tpr4g1023 875 SUPERFAMILY L domain-like 174 484 - -
Tpr4g1023 875 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515
Tpr4g1023 875 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515
Tpr4g1023 875 ProSitePatterns Protein kinases ATP-binding region signature. 597 620 IPR017441 GO:0005524
Tpr4g1023 875 Gene3D Ribonuclease Inhibitor 98 482 IPR032675 -
Tpr4g1023 875 SUPERFAMILY Protein kinase-like (PK-like) 591 862 IPR011009 -
Tpr4g1023 875 SMART LRR_sd22_2 193 216 - -
Tpr4g1023 875 SMART LRR_sd22_2 409 435 - -
Tpr4g1023 875 SMART LRR_sd22_2 289 321 - -
Tpr4g1023 875 SMART LRR_sd22_2 337 360 - -
Tpr4g1023 875 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 302 - -
Tpr4g1023 875 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 292 865 - -
Tpr4g1023 875 Gene3D Transferase(Phosphotransferase) domain 1 668 875 - -
Tpr4g1023 875 Gene3D Phosphorylase Kinase; domain 1 580 667 - -
Tpr4g1023 875 SMART LRR_typ_2 433 457 IPR003591 -
Tpr4g1023 875 SMART LRR_typ_2 193 216 IPR003591 -
Tpr4g1023 875 SMART LRR_typ_2 289 312 IPR003591 -
Tpr4g1023 875 SMART LRR_typ_2 313 337 IPR003591 -
Tpr4g1023 875 SMART LRR_typ_2 120 144 IPR003591 -
Tpr4g1023 875 SMART LRR_typ_2 217 241 IPR003591 -
Tpr4g1023 875 Pfam Protein kinase domain 593 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1023 875 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 302 - -
Tpr4g1023 875 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 292 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1023 Tpr-Chr4 9850389 9854960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1023 21 874 Receptor kinase-like Gene Family AT3G56370 48.520 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Tpr4g1023 Pkinase 3.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1023 - - mtr:MTR_7g073290 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1023 4 9850389 9854960 Tpr4g1023 4 9850389 9854960 ECH
Tpr6g2129 6 23027215 23031385 Tpr4g1023 4 9850389 9854960 PCT