Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1020 ATGAATATTGTTCTTCATTGCATGATTTCTCTTGTAATACTTTATTCTCTTATGTTAACCCCTTGTTATGGCCTCAACCGTAAATTGTTTAATGTCTCTCAAATTCAAAGTAATAATAATAAATGGCAAATGGCAATAGCTACATGGTATGGACCACCAGAAGGTGCTGGTTCGGATGGTGGTGCATGTGGATATGTTGATACTGTAGAGAAACCACCACTTAATAAAATGATATCAGCTGGAGGTCCATCTCTTTTTAAGGGAGGCCAAGGATGTGGTGCTTGTTATGAGGTGCATGTGAAATGCAATAAAAATAGTGCATGCTCAGGAAAAGCCATGCGTGTGATGATAACTGATAATTGCCCTGGATGTGAGTCTACCCAGTTTGATCTAAGTGGAACTGCCTTTGGTTCCATTGCAAAACGTGGTCAAGCTCAAAATCTTCGCAATGCTGGAAAAATTAATATTCAATACAGAAGGGTTAAATGCTATTTTGGGAAATCAATAGCCTTTACAATTGATAGTGGATCCAACCCATACTATTTTGCAACAGAAATAGAATATGAAAATGGAGATGGTGACATTGTAGATGTTGAAGTGAACCAATCAAACACATGGCTTCCAATGCAACGTTCTTGGGGTGCAAAATGGGCTTTGAACAAAGGTTCACAATTTCAAGCTCCATTTTCTATTAAGATCACACAACGTGGAAATGGAGGTGACAAGACCATAGTAGCTAAGAATGTAATCCCACGAAATTGGAAACCCGGTCAAGTTTATCGTTCAACGGTTAATTTCTAG 801 0.3833 MNIVLHCMISLVILYSLMLTPCYGLNRKLFNVSQIQSNNNKWQMAIATWYGPPEGAGSDGGACGYVDTVEKPPLNKMISAGGPSLFKGGQGCGACYEVHVKCNKNSACSGKAMRVMITDNCPGCESTQFDLSGTAFGSIAKRGQAQNLRNAGKINIQYRRVKCYFGKSIAFTIDSGSNPYYFATEIEYENGDGDIVDVEVNQSNTWLPMQRSWGAKWALNKGSQFQAPFSIKITQRGNGGDKTIVAKNVIPRNWKPGQVYRSTVNF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1020 266 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Tpr4g1020 266 PRINTS Major pollen allergen Lol pI signature 102 112 IPR005795 GO:0005576|GO:0019953
Tpr4g1020 266 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Tpr4g1020 266 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Tpr4g1020 266 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Tpr4g1020 266 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Tpr4g1020 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 262 IPR007117 -
Tpr4g1020 266 SUPERFAMILY Barwin-like endoglucanases 36 164 IPR036908 -
Tpr4g1020 266 SUPERFAMILY PHL pollen allergen 167 262 IPR036749 -
Tpr4g1020 266 Pfam Lytic transglycolase 79 158 IPR009009 -
Tpr4g1020 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Tpr4g1020 266 PANTHER EXPANSIN-LIKE PROTEIN B1 3 266 - -
Tpr4g1020 266 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Tpr4g1020 266 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Tpr4g1020 266 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Tpr4g1020 266 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Tpr4g1020 266 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Tpr4g1020 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Tpr4g1020 266 PANTHER EXPANSIN-B3 3 266 - -
Tpr4g1020 266 Gene3D - 164 266 IPR036749 -
Tpr4g1020 266 Gene3D - 28 163 IPR036908 -
Tpr4g1020 266 Pfam Expansin C-terminal domain 169 251 IPR007117 -
Tpr4g1020 266 SMART dpbb_1 78 158 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1020 Tpr-Chr4 9818947 9821351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1020 19 266 Expansin Gene Family AT1G65680 52.362 1.28e-90 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1020 - - gmx:100786475 367.466