Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1018 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGCTTTGGATGTGGAAGAGCATTAGGAGGACATATGAGAGCACATGGGATAGGCGACGAAACCGGTCAAATGGATGACGATGATCCGGCGAGCGATTGGGAAGGTGGCAATGTCCCACAAACAAGTAACAAACGTATGTATTCTCTAAGAACAAACCCCAATAAGCTAAAAAGTTGTAGGGTATGTGAGCATTGTGGAAAAGAATTTTTCTCTTGGAAATCGTTTCTCGAACATGGAAAATGCAACTCCGATGATGCAGATGAAGAGTCTCTTGTATCCTCTCCAGAATCCGACACCATGGCAGATGATGATGATGGTGTCGGTGGCAGAAGAGGATGCGGATGGTCAAAGAGGAAAAGGTCGTTGCGAACTAAAGTAGGTAGTTATAATAACAATTTTAATTGTCCTTCAACCGAAGAAGAAGACTTAGCAAATTGTTTAATGATGTTGTCCAATGCTATTGTTGATCCTCTTGAGGTTGAACCTGAAGAATCATGTGCCTCAGCTAGCAAAGATGAAGAAAGAAGAAACCCTATGAATTTCATTGCACCATTGGCTTATAGAATCCCCTATGAAAACAACAACACCACCAACAACAACAACAATAACAACAACAATAACAACAAAGCCAAAGGTGTTGCTAAAGGGTTATTTGAATGCAAAGCATGTAAAAAAGTTTTCAACTCACATCAAGCATTAGGTGGTCATAGAGCAAGTCACAAAAAGGTTAAGGGATGTTTTGCAGCAAGACTTGATCAAAACCTTGATGATAATATTGTTGAGGATGATGCAATCACACATGAAGAATTTTTCCCTTCAAAATCAAACACAACATATGATCAAGGGACCTCCAATAACCCTCCTACATTGATGGCTTCTTCTTCCAAGAGAAAATCCAAAGTTCATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCTGGACAAGCATTAGGTGGACACAAAAGATGTCATTGGATCACATCAAATGCTCCGGACACATCAACATTGGCTAGGTTTCAACAATTTCAAGACCATATTGAACAAATACCTAAATTTGATAACTCTTCTGAGCCAATTGATCTCAAACTTGACCTTAATCTTCCGGCTCCTACCAATGCACAAATTTACTTGCAACCGCCGTGGGGCGCTAATGCAAGTGCGACGAAGGACAACATCATCAAAGAAGATAATAATAGTCAATGTATGAATCAACAAAATCAAAACAACAACAATAACAAGAACAACAACCTAGTCGATCAAAATAACGACAATAATAATGATAATAACAAAAATAACAACCTTAATACTTTGGTACAAAATGTTGATAATGAAGATGATAAAAAAGCCAAGTTGGCAAAACTAAGTGAGTTAAAGGATGTCATCAACATTGGTGGAAGTTCTTCACCATGGTTGCAAGTTGGAATTGGTGCAACAACTGATGTGAGGAATGATACGTAA 1518 0.3808 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDETGQMDDDDPASDWEGGNVPQTSNKRMYSLRTNPNKLKSCRVCEHCGKEFFSWKSFLEHGKCNSDDADEESLVSSPESDTMADDDDGVGGRRGCGWSKRKRSLRTKVGSYNNNFNCPSTEEEDLANCLMMLSNAIVDPLEVEPEESCASASKDEERRNPMNFIAPLAYRIPYENNNTTNNNNNNNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNLDDNIVEDDAITHEEFFPSKSNTTYDQGTSNNPPTLMASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDHIEQIPKFDNSSEPIDLKLDLNLPAPTNAQIYLQPPWGANASATKDNIIKEDNNSQCMNQQNQNNNNNKNNNLVDQNNDNNNDNNKNNNLNTLVQNVDNEDDKKAKLAKLSELKDVINIGGSSSPWLQVGIGATTDVRNDT* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1018 505 Gene3D Classic Zinc Finger 11 101 - -
Tpr4g1018 505 Gene3D Classic Zinc Finger 235 344 - -
Tpr4g1018 505 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Tpr4g1018 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
Tpr4g1018 505 SUPERFAMILY beta-beta-alpha zinc fingers 13 99 IPR036236 -
Tpr4g1018 505 MobiDBLite consensus disorder prediction 107 128 - -
Tpr4g1018 505 SMART c2h2final6 80 100 IPR013087 -
Tpr4g1018 505 SMART c2h2final6 13 35 IPR013087 -
Tpr4g1018 505 SMART c2h2final6 238 260 IPR013087 -
Tpr4g1018 505 SMART c2h2final6 322 344 IPR013087 -
Tpr4g1018 505 Pfam C2H2-type zinc finger 238 262 - -
Tpr4g1018 505 Pfam C2H2-type zinc finger 13 35 - -
Tpr4g1018 505 Pfam C2H2-type zinc finger 321 346 - -
Tpr4g1018 505 PANTHER OS02G0659100 PROTEIN 1 504 - -
Tpr4g1018 505 PANTHER OS02G0659100 PROTEIN 1 504 - -
Tpr4g1018 505 Coils Coil 423 464 - -
Tpr4g1018 505 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Tpr4g1018 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 322 344 IPR013087 -
Tpr4g1018 505 ProSitePatterns Zinc finger C2H2 type domain signature. 324 344 IPR013087 -
Tpr4g1018 505 SUPERFAMILY beta-beta-alpha zinc fingers 237 344 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1018 Tpr-Chr4 9810772 9812321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1018 137 387 C2H2 Transcription Factor Family AT1G02040 33.984 2.10e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g1018 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1018 - - gmx:100793846 667.537