Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1017 ATGGAGAAACATAAGTGCAAACTTTGTTTCAGAAGTTTCTCTAATGGAAAAGCTTTAGGTGGACACATGAGATCACACATGATGAACCTACCAATTCCACCAAAACAAAACAATTCACCACCACCACCGCCGCCGATGATTCAACTAAGTTTCGAAGCCGATTCGGGTTCATCACCATCATCCTCTTCATTTTATGGTCTAAGAGAGAATCCGAAGCGAAGCTTCCGATTCACAGATCCCAATCAAATCATCGACGGTGGCTCGATAATTCTCCAAGAAGATGGAGATAGCGAAATTGAGTCGTCGAAAAATCCAACCGGTCGACGATCCAAACGTGTTAAGAAAATTGATCCGATGAAGACCTCAATACAGAATAACGAGTCTGTACTGAGTTCTTCATCGGATATAACTACCGAAGAAGACATAGCTTTTTGTCTCATGATGTTGTCTCGCCACAATAACAACAACAACAACAATTGGAAAACACAACATCAAAATCATCAATATCAAGAACAACAAAATCATCATTATCATCAATATCAAGAAGAGGAGGAAGAAGAAGAACAACAATTCAACCAATATCTCGAAGAAGATGAAGAAGAAGACGAAGATGTCGAGGAAGAAGAAGAAGAAGAAAGTGAAGCTGAATCTGAGGAAGAAGAAGAAGAACTGAAACCGTTGAAGAAGGTACGAGGAAGATACAAATGTGACACGTGTAACAAAGTGTTTCGTTCATATCAAGCACTTGGTGGGCATAGAGCGAGTCACAAGAAGAATATGAAATTACTTGCAGAAAATGGTGGTGATTCAATTTCAAACCACCATGACCACAAAAATAAAATTGAAAACAACAATGTTATTGTTAATCATAACAATGTTGAAAAGAGAATTCATGAGTGTCCAATTTGTTTTAGAGAATTTTCCTCTGGTCAAGCACTTGGTGGACATAAGAGAACACATGGTATTGGAATTGGAAATGGAATTGGATCATCAGCACCAGCACCAGCACCAGCACCGGCACCACCAGCAGTAGCAACAACAGCGACGGCGGTTACAACAACAAATGTTCCAACAACCTCAACAGTAAATGTTGAGGTTGTTCGAAGAAGTACCGCGAATTTCGGAGATAATTTGATAGATCTAAATCTTCCTGCTGATATGGATGAAGATGATGATGGTGATGATGTTAGCCAAATTGAAGGCTCTGCTGTTTCCGATGCTGAATTTGTCAAACCTTAA 1239 0.3955 MEKHKCKLCFRSFSNGKALGGHMRSHMMNLPIPPKQNNSPPPPPPMIQLSFEADSGSSPSSSSFYGLRENPKRSFRFTDPNQIIDGGSIILQEDGDSEIESSKNPTGRRSKRVKKIDPMKTSIQNNESVLSSSSDITTEEDIAFCLMMLSRHNNNNNNNWKTQHQNHQYQEQQNHHYHQYQEEEEEEEQQFNQYLEEDEEEDEDVEEEEEEESEAESEEEEEELKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKNMKLLAENGGDSISNHHDHKNKIENNNVIVNHNNVEKRIHECPICFREFSSGQALGGHKRTHGIGIGNGIGSSAPAPAPAPAPPAVATTATAVTTTNVPTTSTVNVEVVRRSTANFGDNLIDLNLPADMDEDDDGDDVSQIEGSAVSDAEFVKP* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1017 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
Tpr4g1017 412 MobiDBLite consensus disorder prediction 386 412 - -
Tpr4g1017 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 320 IPR013087 -
Tpr4g1017 412 Gene3D Classic Zinc Finger 231 320 - -
Tpr4g1017 412 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Tpr4g1017 412 SUPERFAMILY beta-beta-alpha zinc fingers 233 320 IPR036236 -
Tpr4g1017 412 MobiDBLite consensus disorder prediction 184 221 - -
Tpr4g1017 412 MobiDBLite consensus disorder prediction 119 135 - -
Tpr4g1017 412 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 411 IPR044303 GO:0006355
Tpr4g1017 412 ProSitePatterns Zinc finger C2H2 type domain signature. 300 320 IPR013087 -
Tpr4g1017 412 MobiDBLite consensus disorder prediction 88 135 - -
Tpr4g1017 412 SMART c2h2final6 4 26 IPR013087 -
Tpr4g1017 412 SMART c2h2final6 298 320 IPR013087 -
Tpr4g1017 412 SMART c2h2final6 234 256 IPR013087 -
Tpr4g1017 412 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Tpr4g1017 412 MobiDBLite consensus disorder prediction 164 226 - -
Tpr4g1017 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Tpr4g1017 412 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Tpr4g1017 412 Coils Coil 170 225 - -
Tpr4g1017 412 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 411 - -
Tpr4g1017 412 Pfam C2H2-type zinc finger 4 27 - -
Tpr4g1017 412 Pfam C2H2-type zinc finger 298 320 - -
Tpr4g1017 412 Pfam C2H2-type zinc finger 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1017 Tpr-Chr4 9790433 9791992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1017 1 391 C2H2 Transcription Factor Family AT2G45120 35.122 1.14e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g1017 zf-C2H2_6 7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1017 - - gmx:100780611 281.567