Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1006 ATGAAGGACATGCCCTTACCTTTTGAGGAATTTCAAGTGAAGGGAGGAGTGTTAGATTATTTCTCTTCATCTTCAAATTCAGCTTCAGATTCATTTTCATTGCTTTTGAATCAACCACAAGAGCAACAAAATCAACAAAATTGGACATTGGTTAAAGAAGATTATTGCTATGTGGAGCCCACTTCTGTTCTTGATTCAAGAAGAAGCCCTAGTCCTCCAATTTCATCTTCAACAATGTCATCTTCTCTTGGTAGTGGTAGTAATAATGGTAATAGTTCAAACAATAACAACACTTCAATGGTAGTTGTTTCTGAGAATCTTGCTCCTAATCTTTCAAATGAAGAAAGTTTGGAGAATAGTGGTGAAAAATGTGATGGTATGAGAATGGAGGATTGGGAGGGACAAGATCAGTCACTTTTAAGGTTAATTATGGGAGATGTTGAAGACCCTTCTGTTGGATTGAACAAAATCTTGCAAAATAGTGGTGCTGGTTCTCAGAATGTTGATTTTCATGGTGGTTTTGGTGTTTTGGAACATCAACAAGGTTTGAATAATAACAACATGGAAGGTTCTGTTCAACAAGGGAATTACAATGTTTTTCCTTTCATGTCTGAAAACATAGATAGCCATAATGCTAAATCTGGTCCTGAATCTATGTTTGGTAACTATCCTATGCTGACATCGTCATCAACTTCTGGTGTGTTTTGTTCTCAGCAGCAACAGAATCAAGAGTTTGGTGTTGTTGATGATAAGCCTCAAGTTATTAACCCTAATTTTATGATGAACCATAATCAAGTTCAATTCTCGGAGAATCCTTCGTTCTTTGTTCCATTGCCATATCCTCATGTGCAAGAGCAACAGGTTTTCTCTCAGAGTCAGTTGAAACGACCGCTTTTCGACGCTGTTGGGAACAATTATTCTGTACCGAAGTTACCGCTTTTGGATTCTGGCCAAGAAATGTTTGCTAGGAGGCATCAGCAACAAACACAGCTTCCATTGTTTCCTCATCAACATCTGCAGCAGCATGAACAACAACAGCAATCATCGGTTGTTCCGTTTACGAAGCAGCAGAAGGTGAGTTCTACTATTGCCGGAGACGACGCAAGCAACCAGCTTCAGCAGAGTATATTTGATCAACTATACAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAAGCCTTTTCTAAGGGCTTCTTTCTATGCGAAGGAAGCCTTACAGTTAATGCTTCATTCGAACGGTAACAATCTCAATGCTTTTTCACCGATTAGTTTCATATTCAAAATCGGAGCTTACAAGTCTTTTTCCGAGATATCGCCTGTTCTTCAGTTCGCCAACTTTACTTGTAATCAAGTCCTAATTGAAGCCTTGGAAAGGTTCGACCGAATTCACATTGTTGATTTCGATATAGGGTTTGGAGTACAATGGTCTTCTTTTATGCAAGAGCTTGTGTTAAGAGGTAATGGTATACCTTCACTTAAGATTACTGCTGTTGTATCGCCCTCGTCTTGCAATGAGATTGAGCTCAATTTCACCCAAGAGAATCTGAGTCAGTATGCGAAAGACCTCAACATGCCGTTTGAGTTCCGTATTTTGAACATGGAATTCTTGAACTCTCCGTCGTTTCCTCAACCAGCTCATTTCTTTGATAGTAACGAGGCGATTGGTGTGAACTTCCCTGTTTCAAGTTTTATAGGTTATCCATCATCTTTCCCTTTGGCCCTTCACTTTGTCAAGCAATTAAGGCCCAAAGTAGTTGTCACTTTGGATAAAATTTGCGACCGACTCGATGTTCCGCTTCCGACCAACGTTGTTCATGTTCTTCAATGTTACTCATCCTTGCTCGAATCACTTGATGCTGTAAACGTGAACCTCGACGTACTCCAAAAGATTGAGAGGCATTTCATCCAACCAAACATCAACAAAATCGTCCTCGGTCACCACCACCGTTCGCACGAGAAATTACCTCCGTGGAGGAACATGTTTCTTCAATCCGGTTTCTCTCCTTTCACATTCAGCAACTTCACGGAAGCACAAGCTGAGTGTTTGGTTCAAAGGGCACCTGTGAGAGGATTTCAAGTGGAAAGAAAGCCTTCATCTCTTGTTCTATGCTGGCAGAGGAAAGAACTCATCTCAATTTCAACTTGGAGATGCTGA 2211 0.408 MKDMPLPFEEFQVKGGVLDYFSSSSNSASDSFSLLLNQPQEQQNQQNWTLVKEDYCYVEPTSVLDSRRSPSPPISSSTMSSSLGSGSNNGNSSNNNNTSMVVVSENLAPNLSNEESLENSGEKCDGMRMEDWEGQDQSLLRLIMGDVEDPSVGLNKILQNSGAGSQNVDFHGGFGVLEHQQGLNNNNMEGSVQQGNYNVFPFMSENIDSHNAKSGPESMFGNYPMLTSSSTSGVFCSQQQQNQEFGVVDDKPQVINPNFMMNHNQVQFSENPSFFVPLPYPHVQEQQVFSQSQLKRPLFDAVGNNYSVPKLPLLDSGQEMFARRHQQQTQLPLFPHQHLQQHEQQQQSSVVPFTKQQKVSSTIAGDDASNQLQQSIFDQLYKTAELIEAGNPVQAQGILARLNHQLSPIGKPFLRASFYAKEALQLMLHSNGNNLNAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQVLIEALERFDRIHIVDFDIGFGVQWSSFMQELVLRGNGIPSLKITAVVSPSSCNEIELNFTQENLSQYAKDLNMPFEFRILNMEFLNSPSFPQPAHFFDSNEAIGVNFPVSSFIGYPSSFPLALHFVKQLRPKVVVTLDKICDRLDVPLPTNVVHVLQCYSSLLESLDAVNVNLDVLQKIERHFIQPNINKIVLGHHHRSHEKLPPWRNMFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISISTWRC* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1006 736 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 735 IPR005202 -
Tpr4g1006 736 MobiDBLite consensus disorder prediction 64 98 - -
Tpr4g1006 736 MobiDBLite consensus disorder prediction 62 98 - -
Tpr4g1006 736 ProSiteProfiles GRAS family profile. 367 735 IPR005202 -
Tpr4g1006 736 Pfam GRAS domain family 378 735 IPR005202 -
Tpr4g1006 736 PANTHER GRAS FAMILY TRANSCRIPTION REGULATOR 10 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1006 Tpr-Chr4 9659638 9662812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1006 376 736 GRAS Transcription Factor Family AT4G00150 54.270 1.10e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr4g1006 GRAS 1.5e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1006 - - gmx:100801785 926.391