Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0993 ATGTCCTCTTCATCATCAACTTCCTTTTCACCGGACCAGCAACAACAGCAACAACTCTCTCCTTCCGACCAACTCTGTTATGTTCATTGCAATTTTTGTGACACTGTTCTCGCGGTGAGTGTTCCTTCTTCAAGTTTGTTCAAGACCGTGACAGTGAGATGTGGTCATTGCACTAATCTTCTCTCAGTTAACATGCGTGCTTTGCTCCTTCCTGCTCCTAATCAGCTTCACCTTGGACATAACTTCTTCAATCCTCAAAATTTTATGGAGGAGATTCGAAATGCGCCTTCGACAAACATGATGATGAATCAGCTTCCAAATCCAAATGATTTGATGATGAGTGGCATGAGAGGAGTGCATCATGAAGAAATCCCTAAACCTCCAGCTGCAAACAGACCTCCGGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAAGATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCTTTTAGTGCAGCTGCAAAGAATTGGGCCCACTTTCCACACATTCATTTCGGACTTATGCCTGACCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGATTCAGAGGACGTGCTTATGAAAGATGGGTTTTTCACACAAGCAAATGTAGGTGTCTCTCCCTACTAG 666 0.4429 MSSSSSTSFSPDQQQQQQLSPSDQLCYVHCNFCDTVLAVSVPSSSLFKTVTVRCGHCTNLLSVNMRALLLPAPNQLHLGHNFFNPQNFMEEIRNAPSTNMMMNQLPNPNDLMMSGMRGVHHEEIPKPPAANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDSEDVLMKDGFFTQANVGVSPY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0993 221 Pfam YABBY protein 21 185 IPR006780 GO:0007275
Tpr4g0993 221 PANTHER PROTEIN YABBY 4 1 219 - -
Tpr4g0993 221 PANTHER PROTEIN YABBY 6-RELATED 1 219 IPR006780 GO:0007275
Tpr4g0993 221 Gene3D High mobility group box domain 125 182 IPR036910 -
Tpr4g0993 221 SUPERFAMILY HMG-box 129 179 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0993 Tpr-Chr4 9519607 9523743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0993 32 219 C2C2-YABBY Transcription Factor Family AT4G00180 62.679 7.73e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tpr4g0993 YABBY 5e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0993 K25796 - gmx:100781267 382.104