Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0990 ATGGCTTCATTTCCTTTGGTAACAACTCTTTTAATATTTCCCTTTCTTTTCTCCACTATTGTATATGGTTACTCATTAAGTTCCATAAAATCATGGTGTAGCCAAACCCCTTATCCCCAACCATGTGAGTATTATTTAACCCACAATAATTTCAACCAAACCATAAAAAATAAATCCGATTTTTACAAAGTTTCACTTCAACTTGCGATACAAAGAGCACAAAAAGGCAAAGAAAACACGGACTCAGTAGGCTCAAAGTGCCGAAATGCACAAGAAAAAGCCGCATGGTCCGATTGTTGTGAGCTCTATGATTTCACAATTCAAAAGCTAACTCAAACAGTCGACCCAAAGTGCAAAGATACCGATTCTCAAACTTGGCTTAGTACCGCTCTCACAAACCTTGAAACATGCAAAAATGGGTTTTATGACCTTGGTGTCACAAACTATGTCTTACCTTTATTGTCCAATAATGTAACAAAGTTGTTAAGTAACACCTTGTCACTCAAAAAGGTTCCTTACAAACAACCAAGTTACAAAGGTGGATTTCCAACATGGGTTAAACCCGGTGATAGAAAGCTTCTTCAAACATCTTCCGCGGCTTCTAAAGCTAATGTCGTGGTTGCTAAAGATGGTTCTGGCAAGTACACAACTGTGAAGGCCGCGACCGATGCTGCACCAAGTGGTAGCGGAAGGTATGTGATATATGTGAAGGCTGGTGTGTACAATGAACAAGTTGAGATCAAAGCAAAGAATGTCATGTTGGTGGGAGATGGTATTGGCAAGACCATAATCACCGGTAGCAAAAGCGTCGGAGGTGGCACCACTACCTTCCGTTCAGCAACCGTTGCTGCCGTTGGTGATGGATTTATTGCTCAAGACATCACATTCAGAAACACAGCTGGAGCTGCAAATCACCAAGCTGTTGCATTCCGTTCTGGCTCAGATCTATCAGTTTTTTACAAATGTAGTTTCGAAGGTTATCAAGACACACTTTATGTTCATTCAGAGAGACAATTTTATAGAGAATGTAACATTTATGGCACGGTCGATTTCATCTTTGGTAACGCTGCTGTAGTGTTGCAAAGTTGCAACATTATTGCAAGAAACCCACCTCAAAAAACAATCACACTTACCGCTCAAGGACGAACTGATCCAAACCAAAACACCGGAATCATAATTCACAATTCTCAAGTCACAGCCGCATCGGATTTAAACCCTAGTTCCGTTAAATCATATCTCGGCCGACCTTGGCAAAAATATTCAAGAACCGTCTTCATGAAAACTTCAATTGGTGGTTTTATTAACCCTGCTGGTTGGTTACCATGGGATGGTAATTTTGCTTTGGATACTTTATATTATGCTGAATATGCTAATACTGGCTCAGGTGCTTCCACTTCAAATAGGGTTACATGGAAAGGTTACCATGTTCTTACTAGTGCATCTCAAGCTACACCATTCACCGTTGGAAATTTCATTGCTGGTAGTTCATGGTTACCTAACACGGGTGTACCTTTCACCGCCGGACTTTAA 1530 0.4065 MASFPLVTTLLIFPFLFSTIVYGYSLSSIKSWCSQTPYPQPCEYYLTHNNFNQTIKNKSDFYKVSLQLAIQRAQKGKENTDSVGSKCRNAQEKAAWSDCCELYDFTIQKLTQTVDPKCKDTDSQTWLSTALTNLETCKNGFYDLGVTNYVLPLLSNNVTKLLSNTLSLKKVPYKQPSYKGGFPTWVKPGDRKLLQTSSAASKANVVVAKDGSGKYTTVKAATDAAPSGSGRYVIYVKAGVYNEQVEIKAKNVMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQSCNIIARNPPQKTITLTAQGRTDPNQNTGIIIHNSQVTAASDLNPSSVKSYLGRPWQKYSRTVFMKTSIGGFINPAGWLPWDGNFALDTLYYAEYANTGSGASTSNRVTWKGYHVLTSASQATPFTVGNFIAGSSWLPNTGVPFTAGL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0990 509 Pfam Pectinesterase 204 494 IPR000070 GO:0030599|GO:0042545
Tpr4g0990 509 ProSitePatterns Pectinesterase signature 2. 345 354 IPR033131 -
Tpr4g0990 509 SUPERFAMILY Pectin lyase-like 198 508 IPR011050 -
Tpr4g0990 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857
Tpr4g0990 509 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 170 IPR006501 GO:0004857
Tpr4g0990 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 171 IPR035513 -
Tpr4g0990 509 SMART PMEI_2 24 168 IPR006501 GO:0004857
Tpr4g0990 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 171 IPR035513 -
Tpr4g0990 509 ProSitePatterns Pectinesterase signature 1. 228 247 IPR018040 -
Tpr4g0990 509 PANTHER PECTINESTERASE 4 508 - -
Tpr4g0990 509 CDD PMEI-like_3 31 168 - -
Tpr4g0990 509 Gene3D - 198 509 IPR012334 -
Tpr4g0990 509 PANTHER PECTINESTERASE 4 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0990 Tpr-Chr4 9471894 9475973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0990 1 509 Carbohydrate Esterase AT2G45220 66.732 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0990 K01051 - gmx:100794948 836.254