Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0989 ATGATAGCAATTCGTTTGCTTGCAACTCTTTTGGTTCCATTTCTTCTTGCATCATTAGTTTCTTCTTATTCCATGAATGAAGTTAAACTTTGGTGTAACAAAACCCCTAACCCTCAACCATGTGAGTATTTCTTGAACAATAACCCTACTTACAAACACAAACTCATAAAACAAAAAGTTGATTTCTTTACACTTTCATTACAACTTGCTCAACAAAGAGCACTCATAGGCCATGGAAAAATTCTTTCATTAGGTTCAAAATGTAATAACCCACGTGAAAAATCTGCATGGGCTGATTGTGTTGAGCTATATGAACAAACCATCCTTAAACTCAACAAAACCCTAGACACTAAAACAAAGTTTTCTCAAGTTGATGCTCAAACATGGCTAAGCACTGCTCTCACAAACCTTGAAACATGTAAAAGTGGATTCTATGAACTTGGTGTTCAAGATTACATTCTTCCTCTCATGTCCAATAATGTTACTAAGTTATTAAGTAACACTTTGGCTATTAACAAAGTTCAATATCAAGAACCAAGTTACAAAAATGGTTTTCCAACATGGGTTAAGCCAGGTGATAGAAAACTATTGCAAACAAGTTCTTCATCTTCTCGACCTAATGTAGTAGTTGCGAAAGATGGGTCGGGAAAGTACACAACGGTTAGTGCAGCTGTGAATGCGGCACCAAAGAATAACAAAGGAAGGTATGTTATACATGTGAAGGCTGGTGTTTACAATGAACAAGTTGAGATCAAGGCAAAAAATATTATGTTGGTCGGAGATGGTATCGGAAAGACTATAATCACCGGTAGTAAAAGTGTTGGTGGAGGAACCACGACATTCCGTTCTGCCACAGTTGCCGCTGTTGGAGATGGATTTATTGCTCAAGATATCACATTTAGGAACACCGCCGGTGCAAATAACCATCAAGCAGTAGCCTTACGTTCTGGATCAGACTTATCTGTATTTTATAGATGTAGTTTTGAAGGTTATCAAGACACACTATACGTTCATTCAGATAGACAATTCTACAAAGAATGTAACATTTATGGTACAGTTGATTTCATATTTGGTAATGCTGCAGCAGTGTTTCAAAATTGTAACATATTTGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCACAAGGTAGAACAGATCCTAACCAAAACACTGGCATTTCTATTCATAATTCTAGGGTTACAGCCGCTTCGGATTTGAAACGTGTTCAAAATTCTGTTAAAACTTATCTTGGAAGACCATGGAAACAATATTCAAGGACAGTTTTTATGAAGACTTCTCTTGATAGTTTGATTCATCCTACAGGTTGGTTAGAATGGAGTGGTAATTTTGCATTAAGTACTTTATATTATGGAGAGTATATGAACACTGGTCTTGGTTCTTCGACAAGAAATCGGGTTAAATGGCAAGGTTATCATGTGATAACGAGTGCTTCTGAGGCATCGAAATTCACTGTTTCAAGTTTGATTGCGGGAAACTCATGGTTGCCCGCAACTAAAGTTCCTTTTACATCTACTCTTTGA 1548 0.3689 MIAIRLLATLLVPFLLASLVSSYSMNEVKLWCNKTPNPQPCEYFLNNNPTYKHKLIKQKVDFFTLSLQLAQQRALIGHGKILSLGSKCNNPREKSAWADCVELYEQTILKLNKTLDTKTKFSQVDAQTWLSTALTNLETCKSGFYELGVQDYILPLMSNNVTKLLSNTLAINKVQYQEPSYKNGFPTWVKPGDRKLLQTSSSSSRPNVVVAKDGSGKYTTVSAAVNAAPKNNKGRYVIHVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGANNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYKECNIYGTVDFIFGNAAAVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKRVQNSVKTYLGRPWKQYSRTVFMKTSLDSLIHPTGWLEWSGNFALSTLYYGEYMNTGLGSSTRNRVKWQGYHVITSASEASKFTVSSLIAGNSWLPATKVPFTSTL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0989 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Tpr4g0989 515 PANTHER PECTINESTERASE 6 514 - -
Tpr4g0989 515 PANTHER PECTINESTERASE 6 514 - -
Tpr4g0989 515 SMART complete 240 418 IPR006633 -
Tpr4g0989 515 Gene3D - 201 515 IPR012334 -
Tpr4g0989 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Tpr4g0989 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 174 IPR035513 -
Tpr4g0989 515 CDD PMEI-like_3 30 173 - -
Tpr4g0989 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 173 IPR006501 GO:0004857
Tpr4g0989 515 Pfam Plant invertase/pectin methylesterase inhibitor 27 171 IPR006501 GO:0004857
Tpr4g0989 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Tpr4g0989 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Tpr4g0989 515 SUPERFAMILY Pectin lyase-like 202 514 IPR011050 -
Tpr4g0989 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0989 Tpr-Chr4 9456355 9458908 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0989 1 515 Carbohydrate Esterase AT2G45220 65.830 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0989 K01051 - gmx:100783964 872.463