Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0987 ATGAAATTGCATGGCTTAGATAGCATGAGCATCTTAAAAAATCAAACAATAAGTAGTTTGGCTCTAAGAGATTGTGCTAAACTCTATGAGGAGAGTGAGTTTAGGCTTAATCAAATGATGTTTGAAAAGAGTAGTTACTCTAATGAAGATGCTCTTATATGGATAAGTGCATTGATGACAAACCATAGGACTTGTTTGGATGGATTAAATGACAAAGGATATTTTCAAGGTGATCAAATTTTGGGTAGAAACTTGACAAGGTTGCTTGGCCAAACAATTGCTTTTTATTCAAACAACAAAGTAAAAGGAAAAGAACAACCTCAAAGAAACACAATATTAGAAGAAAATGATGGACTATTAGAATCATGGAGTCTAGCAAACAATAAAGCAGATTATACAGTTGCACAAGATGGTTCAGGAACTCACAAAACAATCAAAGAAGCAGTAGATGCACTTGCTTCAATGGGACATAATCGTCCTTCAAGAGCAATTATACATGTAAAAGCAGGAGTGTACGATGAAAAGGTTGAGATTGGAAGAAATTTGCATAATGTTATGTTTGTTGGAGATGGCATTAACAAAACTGTTGTCACTGGAAATAGGAATGTTGTTCATGGTTCTACCACTCTTAACTCTGCCACATTTGATGTATCAGGGGATGGATTTTGGGCAAGAGACATGACATTTGAGAACACAGCAGGACCAGAAAATCACCAAGCAGTAGCACTAAAAGTAAGTTCAGATTTATCAGTCTTCTACAGATGCAGCTTCAAAGCCTACCAAGACACACTTTACGTCCACTCGAATCGACAATTCTACCGCGACTGCCACATATACGGAACAATCGATTTCATATTCGGCGACGCAGCCGTAGTATTACAAAACTGCGACATTTTCATTCGGAAACCAATGAGTCAGCAATCAAATTTCATCACGGCACAAGGTCGAGACGATCCAAACAAACCGACGGGAATTTCTATACAAAATTGTAGGGTTAGGCCTGATTCTGAATTTTCTATGGTAAAGGATAATTTCAATAGTTTTTTAGGTAGGCCTTGGAAAAAATATTCAAGAACTGTTTTTATAAAAAGTGATTTAGATGAATTAATTCATCCTAAAGGTTGGGGTGAATGGGAGGGTAATTTTGCAGTTTCAACTTTATATTATGGTGAGTATATGAATTATGGAAATGGTGCATCTACACAAAATAGGGTTAATTGGCCTGGTTTTCATGTGTTGAATAGTGCAAATGAGGCTTCACAATTTACAGTTAGTAGATTTTTGCAAGGTGAATATTGGATTTCAGCTTCAGGGGTGCCATTTTGGGCTGGAATTTAA 1338 0.3655 MKLHGLDSMSILKNQTISSLALRDCAKLYEESEFRLNQMMFEKSSYSNEDALIWISALMTNHRTCLDGLNDKGYFQGDQILGRNLTRLLGQTIAFYSNNKVKGKEQPQRNTILEENDGLLESWSLANNKADYTVAQDGSGTHKTIKEAVDALASMGHNRPSRAIIHVKAGVYDEKVEIGRNLHNVMFVGDGINKTVVTGNRNVVHGSTTLNSATFDVSGDGFWARDMTFENTAGPENHQAVALKVSSDLSVFYRCSFKAYQDTLYVHSNRQFYRDCHIYGTIDFIFGDAAVVLQNCDIFIRKPMSQQSNFITAQGRDDPNKPTGISIQNCRVRPDSEFSMVKDNFNSFLGRPWKKYSRTVFIKSDLDELIHPKGWGEWEGNFAVSTLYYGEYMNYGNGASTQNRVNWPGFHVLNSANEASQFTVSRFLQGEYWISASGVPFWAGI* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0987 445 Gene3D - 125 445 IPR012334 -
Tpr4g0987 445 PANTHER PECTINESTERASE 23 444 - -
Tpr4g0987 445 Gene3D Invertase/pectin methylesterase inhibitor family protein 4 96 IPR035513 -
Tpr4g0987 445 Pfam Plant invertase/pectin methylesterase inhibitor 18 77 IPR006501 GO:0004857
Tpr4g0987 445 SUPERFAMILY Pectin lyase-like 129 444 IPR011050 -
Tpr4g0987 445 ProSitePatterns Pectinesterase signature 2. 278 287 IPR033131 -
Tpr4g0987 445 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 23 444 - -
Tpr4g0987 445 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 19 74 IPR035513 -
Tpr4g0987 445 Pfam Pectinesterase 132 431 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0987 Tpr-Chr4 9438958 9443833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0987 20 445 Carbohydrate Esterase AT3G60730 56.264 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0987 K01051 - gmx:100792852 689.878