LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g0987	ATGAAATTGCATGGCTTAGATAGCATGAGCATCTTAAAAAATCAAACAATAAGTAGTTTGGCTCTAAGAGATTGTGCTAAACTCTATGAGGAGAGTGAGTTTAGGCTTAATCAAATGATGTTTGAAAAGAGTAGTTACTCTAATGAAGATGCTCTTATATGGATAAGTGCATTGATGACAAACCATAGGACTTGTTTGGATGGATTAAATGACAAAGGATATTTTCAAGGTGATCAAATTTTGGGTAGAAACTTGACAAGGTTGCTTGGCCAAACAATTGCTTTTTATTCAAACAACAAAGTAAAAGGAAAAGAACAACCTCAAAGAAACACAATATTAGAAGAAAATGATGGACTATTAGAATCATGGAGTCTAGCAAACAATAAAGCAGATTATACAGTTGCACAAGATGGTTCAGGAACTCACAAAACAATCAAAGAAGCAGTAGATGCACTTGCTTCAATGGGACATAATCGTCCTTCAAGAGCAATTATACATGTAAAAGCAGGAGTGTACGATGAAAAGGTTGAGATTGGAAGAAATTTGCATAATGTTATGTTTGTTGGAGATGGCATTAACAAAACTGTTGTCACTGGAAATAGGAATGTTGTTCATGGTTCTACCACTCTTAACTCTGCCACATTTGATGTATCAGGGGATGGATTTTGGGCAAGAGACATGACATTTGAGAACACAGCAGGACCAGAAAATCACCAAGCAGTAGCACTAAAAGTAAGTTCAGATTTATCAGTCTTCTACAGATGCAGCTTCAAAGCCTACCAAGACACACTTTACGTCCACTCGAATCGACAATTCTACCGCGACTGCCACATATACGGAACAATCGATTTCATATTCGGCGACGCAGCCGTAGTATTACAAAACTGCGACATTTTCATTCGGAAACCAATGAGTCAGCAATCAAATTTCATCACGGCACAAGGTCGAGACGATCCAAACAAACCGACGGGAATTTCTATACAAAATTGTAGGGTTAGGCCTGATTCTGAATTTTCTATGGTAAAGGATAATTTCAATAGTTTTTTAGGTAGGCCTTGGAAAAAATATTCAAGAACTGTTTTTATAAAAAGTGATTTAGATGAATTAATTCATCCTAAAGGTTGGGGTGAATGGGAGGGTAATTTTGCAGTTTCAACTTTATATTATGGTGAGTATATGAATTATGGAAATGGTGCATCTACACAAAATAGGGTTAATTGGCCTGGTTTTCATGTGTTGAATAGTGCAAATGAGGCTTCACAATTTACAGTTAGTAGATTTTTGCAAGGTGAATATTGGATTTCAGCTTCAGGGGTGCCATTTTGGGCTGGAATTTAA	1338	0.3655	MKLHGLDSMSILKNQTISSLALRDCAKLYEESEFRLNQMMFEKSSYSNEDALIWISALMTNHRTCLDGLNDKGYFQGDQILGRNLTRLLGQTIAFYSNNKVKGKEQPQRNTILEENDGLLESWSLANNKADYTVAQDGSGTHKTIKEAVDALASMGHNRPSRAIIHVKAGVYDEKVEIGRNLHNVMFVGDGINKTVVTGNRNVVHGSTTLNSATFDVSGDGFWARDMTFENTAGPENHQAVALKVSSDLSVFYRCSFKAYQDTLYVHSNRQFYRDCHIYGTIDFIFGDAAVVLQNCDIFIRKPMSQQSNFITAQGRDDPNKPTGISIQNCRVRPDSEFSMVKDNFNSFLGRPWKKYSRTVFIKSDLDELIHPKGWGEWEGNFAVSTLYYGEYMNYGNGASTQNRVNWPGFHVLNSANEASQFTVSRFLQGEYWISASGVPFWAGI*	446

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g0987	445	Gene3D	-	125	445	IPR012334	-
	Tpr4g0987	445	PANTHER	PECTINESTERASE	23	444	-	-
	Tpr4g0987	445	Gene3D	Invertase/pectin methylesterase inhibitor family protein	4	96	IPR035513	-
	Tpr4g0987	445	Pfam	Plant invertase/pectin methylesterase inhibitor	18	77	IPR006501	GO:0004857
	Tpr4g0987	445	SUPERFAMILY	Pectin lyase-like	129	444	IPR011050	-
	Tpr4g0987	445	ProSitePatterns	Pectinesterase signature 2.	278	287	IPR033131	-
	Tpr4g0987	445	PANTHER	PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED	23	444	-	-
	Tpr4g0987	445	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	19	74	IPR035513	-
	Tpr4g0987	445	Pfam	Pectinesterase	132	431	IPR000070	GO:0030599\|GO:0042545

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g0987	Tpr-Chr4	9438958	9443833	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g0987	20	445	Carbohydrate Esterase	AT3G60730	56.264	0.0	542

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g0987	K01051		-	gmx:100792852	689.878

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