Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr4g0984 | ATGGCACAAAAACTCATTCTCCCATTACTAGTCATATTCCTCTCACTCTTCTTAGAGTCCTCCCTAGCCAAACATAACTCTCAAACAATAACCTACATAGAGTCTTCTTGCAATGGTACCCTCTACCCTAAACTTTGCATTCGTTGTCTTAACAAATTTTCTCATTCCACCATAAATGGACCTCAACACTTAGCCCAAGTTGCCTTATCCGTGAGCCTCTCTAGAGCCCTACAAACAAGAGGGTACCTTTTGAATGTTGCTAAAGAACTCAAAGCAATTGATCATAAAAACAAAAGATTGTACCTAACCGTGCAAGATTGTGTGAATCAAATCAATGATAGTGTTGATCAACTTAGCCAAGCCATCAAAGAATTAAAAAGGTTGAACAACTTTAACACCATCATCAATGATAAAGTGTTGTGGCATATAAGTAATGTTGAGACATGGGTGAGCACGGCATTAACCGATGCGAGTAGTTGTGTACAATCGTTCCCCGGTCATAGGATGAGCAAAAGGGTTGCGACGATTAAGGTCAAGGCGAAGAATGTTGCGGAAGTTACTAGTAATGCACTTGCTTTGTTTCATAGTTATGCTTCTAGTTACAAGCAAGCAGCAGCTAGAGCTACCAAGAAGCCTTGA | 639 | 0.4022 | MAQKLILPLLVIFLSLFLESSLAKHNSQTITYIESSCNGTLYPKLCIRCLNKFSHSTINGPQHLAQVALSVSLSRALQTRGYLLNVAKELKAIDHKNKRLYLTVQDCVNQINDSVDQLSQAIKELKRLNNFNTIINDKVLWHISNVETWVSTALTDASSCVQSFPGHRMSKRVATIKVKAKNVAEVTSNALALFHSYASSYKQAAARATKKP* | 213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr4g0984 | 212 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 5 | 200 | - | - | |
| Tpr4g0984 | 212 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 29 | 197 | IPR035513 | - | |
| Tpr4g0984 | 212 | Pfam | Plant invertase/pectin methylesterase inhibitor | 32 | 193 | IPR006501 | GO:0004857 | |
| Tpr4g0984 | 212 | Coils | Coil | 108 | 128 | - | - | |
| Tpr4g0984 | 212 | PANTHER | BNAANNG18590D PROTEIN | 5 | 200 | - | - | |
| Tpr4g0984 | 212 | SMART | PMEI_2 | 28 | 193 | IPR006501 | GO:0004857 | |
| Tpr4g0984 | 212 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 1 | 197 | IPR006501 | GO:0004857 | |
| Tpr4g0984 | 212 | CDD | PMEI-like_3 | 35 | 199 | - | - | |
| Tpr4g0984 | 212 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 32 | 196 | IPR035513 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr4g0984 | Tpr-Chr4 | 9414205 | 9415057 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr4g0984 | 19 | 194 | Carbohydrate Esterase | AT5G53370 | 26.230 | 6.88e-09 | 53.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr4g0984 | - | - | mtr:MTR_4g025590 | 335.109 |