Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0983 ATGGCTGGGAAGAAGGTGAAAGTTGCCTTTATCTGTAATATTTCAGCAAGGAAGGAATGCTATAGGAAAAGAAAGAAGGGTATCATAAAAAAGATGAGAGAAATCAAAATTCTTTGCGATATTCCAGCATGTGCTATAATTTCAAATCCTTTTAATTCTAATAACACAGAGGTGTGGCCAGATCTAGAGGAAGCCAAGCAAGTGATTGAGAGGTATCAGAATTTATCGCAGATCGATAAGACGAAAAATGTGAACCAAGAGAGCTTTGTCTTGCAGAGGCTTACTAAAGCCAGGGAGAAGCTTGAAAAGCAAAGACAAGAGATTCGTGACAAGGAGATGACCATTCGTATGATTCAATACATGAAAAACAAAAATTTGCCTGATGATGTTTCTGTTTCAGATTTGAAACACTTTCAAAAGCTAATTGAGGAGAATCTCAAAGATATTGATAACAAGTTGAATGGATCCAATTAA 474 0.3608 MAGKKVKVAFICNISARKECYRKRKKGIIKKMREIKILCDIPACAIISNPFNSNNTEVWPDLEEAKQVIERYQNLSQIDKTKNVNQESFVLQRLTKAREKLEKQRQEIRDKEMTIRMIQYMKNKNLPDDVSVSDLKHFQKLIEENLKDIDNKLNGSN* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0983 157 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Tpr4g0983 157 PANTHER MADS BOX PROTEIN 2 155 - -
Tpr4g0983 157 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Tpr4g0983 157 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Tpr4g0983 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Tpr4g0983 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Tpr4g0983 157 Coils Coil 84 114 - -
Tpr4g0983 157 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0983 Tpr-Chr4 9404097 9404570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0983 1 153 MADS-box Gene Family AT5G26630 41.558 2.42e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g0983 SRF-TF 5.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0983 - - gmx:100792290 171.785