Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr4g0977 | ATGAGTAGACGCTCCAGCAGAACCGTCTATGTTGGTAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATAACTCACATTGACCTAAAGGTTCCACCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCTGAGGATGCAATTCGCGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGGCTGCTCATGGTGGTCGTGGTACTGGTAATTCATCTTCAAGAGATCGATATAGTAGTCACACCAATGGCCGGGGTGGACGTGGAGTATCCAGACGTTTTGAATATCGCGTTCTAGTCAATGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGTGAAATAG | 399 | 0.4662 | MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGNSSSRDRYSSHTNGRGGRGVSRRFEYRVLVNGLPSSASWQDLKVK* | 133 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr4g0977 | 132 | PANTHER | OS07G0673500 PROTEIN | 2 | 130 | - | - | |
Tpr4g0977 | 132 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 130 | - | - | |
Tpr4g0977 | 132 | CDD | RRM1_SF2_plant_like | 8 | 78 | - | - | |
Tpr4g0977 | 132 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
Tpr4g0977 | 132 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 105 | IPR035979 | GO:0003676 | |
Tpr4g0977 | 132 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
Tpr4g0977 | 132 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
Tpr4g0977 | 132 | Gene3D | - | 1 | 112 | IPR012677 | - | |
Tpr4g0977 | 132 | MobiDBLite | consensus disorder prediction | 84 | 103 | - | - | |
Tpr4g0977 | 132 | MobiDBLite | consensus disorder prediction | 79 | 106 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr4g0977 | Tpr-Chr4 | 9370617 | 9371814 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr4g0977 | 3 | 80 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 34.568 | 1.32e-07 | 47.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr4g0977 | K12890 | - | gmx:100789847 | 246.899 |