Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0977 ATGAGTAGACGCTCCAGCAGAACCGTCTATGTTGGTAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATAACTCACATTGACCTAAAGGTTCCACCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCTGAGGATGCAATTCGCGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGGCTGCTCATGGTGGTCGTGGTACTGGTAATTCATCTTCAAGAGATCGATATAGTAGTCACACCAATGGCCGGGGTGGACGTGGAGTATCCAGACGTTTTGAATATCGCGTTCTAGTCAATGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGTGAAATAG 399 0.4662 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGNSSSRDRYSSHTNGRGGRGVSRRFEYRVLVNGLPSSASWQDLKVK* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0977 132 PANTHER OS07G0673500 PROTEIN 2 130 - -
Tpr4g0977 132 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 130 - -
Tpr4g0977 132 CDD RRM1_SF2_plant_like 8 78 - -
Tpr4g0977 132 SMART rrm1_1 8 78 IPR000504 GO:0003723
Tpr4g0977 132 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Tpr4g0977 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Tpr4g0977 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Tpr4g0977 132 Gene3D - 1 112 IPR012677 -
Tpr4g0977 132 MobiDBLite consensus disorder prediction 84 103 - -
Tpr4g0977 132 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0977 Tpr-Chr4 9370617 9371814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0977 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 1.32e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0977 K12890 - gmx:100789847 246.899