Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0942 ATGGTTCGCTCCACTGGGATTACCCTTTTTACCCACCTCGCTCGTCGATCTCTCTTTCACGCCAATGATTCCGTATATCAAGTAGTGTTCCAAAGGGGTTATAGGGCACTGAATTCAGGATCACGTGATTCATCTAGAGTTATTGATGGTTATGCATCAAATGTTAGAGATGGTGTTAATAAGAAGAACTGGTTGCTATTTGGAGCGGCTAATTCATATTTCGGGGCTTCTAGATCAATTCATGGCTCGGCATCATTGGCAAGGGACTATTATGATGTTCTTGGTGTGAGTAGGGATGCAAGCTCTTCCGAATTAAAGAAAGCTTACCATGGGCTTGCAAAGAAGCTCCATCCGGATGCAAATAAAGATGATCCTGATGCTCAAAAGAAGTTTCAAGAAGTTACAACGGCATATGAGGTTTTGAAGGATGGGGAAAAACGTCAACAATATGATCAGGTTGGACATGATGCCTATGTAAACAACCAAACCAATGGTTTCCCAGGCGATAATGGCTTTAATCCTTTCGAGCAGGCCTTCAATGGTCATGATATTTTCAACAGCTTTTTCCATCAAAATGTTGGCGGACAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTATCCAAGGGTGCACCAAAACTTTGTCATTTCAAACAGACGTGCTTTGTAATACTTGTGGTGGGAGTGGTGTTCCACCTGGTACAAGACCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAATGATGCATGTACAAACGGGAATATTCAGAATGCAAAGTACGTGTTTTACGTGCAAGGGAACTGGAAAAATTGTATCGAGTTTTTGCCAATCTTGCAAGGGTGCGAAAGTTGTCAAAGGAACAAAGTCAATCAAGTTGAAGACTATTCCTGGGATGGACAACAATGACACCCTAAAGGTGTCTGGAGGTGGTGGAGCAGATCCTGATGGACATCATTCCGGTGATCTATTTGTTACTATCAAGGTTAGAGAAGATCCTGTTTTTCGCAGAGAAGGATTAGATATTCACGTGGATGCTGTTTTAAGTATCACCCAGGCTATTTTGGGGGCAACCATTGAGGTCCCATCTTTTACCGGACGTGTAATGCTTAAGGTTCACCCAGGTACCCAACCTGGTCAGAAGGTGGTTATGAAAAGGAAAGGTATAAGGAAAGGAACAAATAGTTTCAAATATGGGGACCAATATGTTCATTTTACTGTCAGCATTCCAACAAACCTGACAGAAAGACAGCGTCAATTGATCGAAGAGTTTGCCAAGGAAGGGCAAGAGGAAACTGATAAACGGAAGACTGCTTCGGCGTCTAGTTAA 1335 0.424 MVRSTGITLFTHLARRSLFHANDSVYQVVFQRGYRALNSGSRDSSRVIDGYASNVRDGVNKKNWLLFGAANSYFGASRSIHGSASLARDYYDVLGVSRDASSSELKKAYHGLAKKLHPDANKDDPDAQKKFQEVTTAYEVLKDGEKRQQYDQVGHDAYVNNQTNGFPGDNGFNPFEQAFNGHDIFNSFFHQNVGGQDVKTFIELSFMEAIQGCTKTLSFQTDVLCNTCGGSGVPPGTRPETCKRCKGSGMMHVQTGIFRMQSTCFTCKGTGKIVSSFCQSCKGAKVVKGTKSIKLKTIPGMDNNDTLKVSGGGGADPDGHHSGDLFVTIKVREDPVFRREGLDIHVDAVLSITQAILGATIEVPSFTGRVMLKVHPGTQPGQKVVMKRKGIRKGTNSFKYGDQYVHFTVSIPTNLTERQRQLIEEFAKEGQEETDKRKTASASS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0942 444 SMART dnaj_3 88 146 IPR001623 -
Tpr4g0942 444 Gene3D - 332 442 - -
Tpr4g0942 444 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 30 442 - -
Tpr4g0942 444 ProSiteProfiles Zinc finger CR-type profile. 212 290 IPR001305 GO:0031072|GO:0051082
Tpr4g0942 444 CDD DnaJ_C 196 415 - -
Tpr4g0942 444 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Tpr4g0942 444 Gene3D - 225 285 - -
Tpr4g0942 444 CDD DnaJ 89 143 IPR001623 -
Tpr4g0942 444 Gene3D - 198 327 - -
Tpr4g0942 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 423 IPR008971 GO:0006457|GO:0051082
Tpr4g0942 444 CDD DnaJ_zf 225 285 IPR001305 GO:0031072|GO:0051082
Tpr4g0942 444 Pfam DnaJ domain 89 151 IPR001623 -
Tpr4g0942 444 ProSiteProfiles dnaJ domain profile. 89 154 IPR001623 -
Tpr4g0942 444 Pfam DnaJ central domain 225 285 IPR001305 GO:0031072|GO:0051082
Tpr4g0942 444 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 442 - -
Tpr4g0942 444 Hamap Chaperone protein DnaJ [dnaJ]. 86 439 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Tpr4g0942 444 PRINTS DnaJ domain signature 91 109 IPR001623 -
Tpr4g0942 444 PRINTS DnaJ domain signature 109 124 IPR001623 -
Tpr4g0942 444 PRINTS DnaJ domain signature 126 146 IPR001623 -
Tpr4g0942 444 PRINTS DnaJ domain signature 146 165 IPR001623 -
Tpr4g0942 444 SUPERFAMILY Chaperone J-domain 88 193 IPR036869 -
Tpr4g0942 444 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 212 288 IPR036410 -
Tpr4g0942 444 Pfam DnaJ C terminal domain 201 412 IPR002939 -
Tpr4g0942 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 291 341 IPR008971 GO:0006457|GO:0051082
Tpr4g0942 444 Gene3D DnaJ domain 86 197 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0942 Tpr-Chr4 9082513 9090488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0942 83 151 C2H2 Transcription Factor Family AT1G74250 40.541 2.04e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0942 K03686 - gmx:100799735 702.59