LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g0939	ATGACAATATCCTTTGATTTCAAACACGATGTTTTCTTGGGTTATTTTAGTAATAACAATGGAACCACCACCAACTCATTTGTTAATCATCTCTATGGAGGTTTAGTTAACAAAGGAATCAACACCTTCATCAAAGAATACGGTGAAATCAAAGCTTGCATTGAAGAAATTGAAAATTCAAGAATGTCAATTGTTGTGCTATGTGAAAACTATGCATCTTCCACTTCATGTCTTGATGAACTTGTCAAGATTACTCAGTATATTGACAACAAAAGTAGAAATGTAGCTGCAATATTCTACAAAGTTGAACCGTCAGATATACGGAAACAGAAACATTCTTATGAAGTAGCCATGGCGGAACATGAAAAGATATATGGGAAAGAGTCGGAGATGATTAAGACATGGAGGAATGCTTTGACTAGAGTTTGTGATCTAAGTGGAGTACATTGCAAAGATGATGTGTATGAATCTGTGCTCATAGAAAAGATTGTTAAAGACACATTCACTAAAGTGGCTCCTGCACCAGTACAAATGAAGCACATAGTTGGACTTGATACTCGTTTTGAGGATGTGAAATCAGTTTTAGATATTGAGTCTAATGATACCGTTCGAGTGATGGGAATTTATGGAGCTGGTGGAATAGGAAAAACAACATTTGCAGCCTATTTATATGACAAGATTAGGCACCTTTTTGAAGCATCAGCTTTTCTTCTTCATGTCAGAGAAGAATCAAACAAAGGCATCAAAGGCCTCGAAGATCTGCAAAAGATACTTTTATCTCAGTTGGGTGAGGATATAGGCACAATGGTGGGAAGCACATTTAAAGGAAGTGTTGAAATCAAACGCAGGCTTGGCAAGAGAAGAGTTCTTCTAGTTTTGGATGACATCGATGACAAAGGAAACTTGAACTTACTGGTTGGCGCACGTGATTGGTTTGGTTCCGGTAGTAGGATCATAATAACAACAAGGGATGAAACTTTGCTAGATAGTCATGACGTTGAAATTAATAAATATAAAATGGAGGTGTTAACTTATCGCGACTCGCTAGAACTCTTTTGTTGGAATGCCTTTGATAATAACAGACCTGCAGAAAACTTTGAATACATGTCTAATCGTGCAGCGAACTATGCAAATCGTATACCGTTGGCTTTATGTGTAATAGGTTCAAATTTGAAGGGTAAAAGCATAGAAGAATGGGAAAGTGAATTGGGAAAATATAAGATGGTTCCACATGCTGATATTCAAGGTGTACTAGAAATAAGCTACTATAGTTTATCTGAATTAGAGAGGAAAATATTTTTGGACTGTGCTTGCTTCTTCAAAGGTGAAAAATGGGTATATGTTGAAAGGATATTAAAGGGTTGTCATTACTCCCCAAGTTTAAGAGTGTTTGCTTCTAAGTGTCTAATGACTATCGATGAAAATGGCTGTTTGATGATGCATAGTCTAATTCAAGACATGGGTAGAGAAGTTGTTAGAAAGGAGTCTCCATTAATCCCTGGTAATCGCAGAAGGTTATGGTATCATAAAGACATTCTTCAAGTACTCGAAGGGAATTCAGGAAGCCGCAATATTGAAGGAATAATGTTTCATCCTCCTACACATGAGGTAGTTGATCAATGGACTAATACTTCTTTTGAAAAGATGAAGAATCTCAAAATTCTTATCGTTAGGAATGCAACATTTTCAACAGGACCAAGTAGTTTACCGAATAGTTTACGGCTACTTGACTGGATGGGGTTCCCATCAAAGTCATTTCCACCTGATTTTTATCCCGAGAAAATTGTTGACTTCAAATTATCACATAGTCCTCTGATATTGGCAAATCCACTTCAGACATTTGAAGATTTGACATTCATGAATCTCTCCGATTGTCTATCGATAACTCAAATGCCTGATCTGTCAGGAGCAAAAAATTTAAGAGTATTCACAATTGACAGATGCCATAAATTGGAAGGGTTTCATAAATCCTTTGGATTATATATGTCCAAACTTGTGTATTTAAGTGCATCAGAGTGTACCATGCTCAAAACTTTTGTGCCAAGAATGTATTTTCCATCCCTTGAAGTAATTTCGTTTAACTTCTGCAAAAGACTCGAACACTTCCCGGATGTAATGCGAAAGATGGATAAGCCGTTAAAGATTCACATGATAAATACTGGTATTAAAGAGTTCCCAGAGTCCATTGATAAACTTACAGGGCTTGAATATGCAGACATGTCAACCTGCGAGCGACTCATAAATCTATCAAGAGGGTTTTTATTGTTGCCGAAACTTACCACATTAAAAGTTGATGGATGTTCTCAGCTTCGAAAATCATTTAGAAGGTTCAAAGAGAGCCATTCAATAGCAAATGGCTGCCCAAATATAAAGGAGCTGTGTTTCAGCAAGGCTAATCTATCATGTGAAGATCTTTACATGATTCTTGAAATACTTCCGAAATTGGAATATTTGAATGTGTCGGACAATGGATTTGTCTCCCTTCCAGAATGCATCAAAGGATCTTCGCAGTTGAAAAGTCTTGATATAAGCTTTTGCAGGAACCTGATGGACATTCCACAACTTCCATCAAGTATTCAGAAAGTAGATGCAAGATACTGTCATTCCATAACTCCAAAAGCATCAAGCATGCTATGGTCCAAGGTTTGCGAAGAAAAGCAAAGAATACAAGTAGTGATGCCTAAAACGGAAATTCCAAATTGGTTTTATTGTGTTGGCAGTGAAGATATTCCTGTTTTTTGGGCTCGCCGGAATTTCCCAGTCATTGCATTAGCATTCGAGTTTGGTGAAATCAAAGAGAATGGTGAAATAAAGATGGACACTTTCACCTCAGAAATCTTTCCTGGAATGTCCTCAGATAAGTCTTCTCATTTTGTTGGTCTGCATTTGTTTGTAGAGGGACAAGAAATATCTCGCAAAGATTACCATTACTGCATTGTCGGCGAACATCATGTGTTAATGTGTGATCTTAGGACTTTGTTTAACGATGAAGAGTGGCAGGGTCTTGATGCATCTTTTGGAGATGAGTGGAAGAAAATTCAGGTTCAATTTGAATCACAGTTGATTATTAATCATTGGAGAGTTTATGTGTACAAACAGAAAACAAAAGATGATGATATCCAATTCAGCTTTCCCTATTCAACAGACTATGTACCAATTCCATCACCAAATTTGGTTCCAAAAAAATCTCTAAACCAGAAAATAAAACATATACAAAGTCTTGATCAGGTAGAAGCATTTGGCCAGTACTTAAATACTTTCAGATCAAAACAATCTGCCACTGTTGCAAACGAACTATTGAGGTGGTGTAGGTACACTAGAGGGGGGCCTCCTTCAGCATGTGTCTATGAGGCAAGTTTAATGCAAGAACACGAAGACAGTGTGTGGAATGCGGCGCTGATTTTGGAGATGATGAGGAATGTGGTGAATCATATTTCCGAAACAAAAGTTCAAAGTGCAGTCCATTTGGTGGTTGAATTATTGACAACAAGGGCACAACATGTAAAGGAAAAAGGCCATGAGGTTTTGAACATCAATATGAGTATGCCAATTATACTAGAGGAATGTGAATGTCACCGTTTTATAGGTTCATCATCTCAATTTGGATCCTCCCCGACCGTCCTAACTCTGCAACAGAAAAAGACACAAATGGGACGACAGAGAGAGGCTCCGAGCCGTCACTATTGGGGAAGTGTTGAGTTAAAAGAAGGAGATACACTTGTGTGGAGAATTCGGAAAGGCAAAGAATCCATGAGGGGGAGTGTAAGCAATATTGTTGTTCTATTGAAATGCCAACATTGTTCCTTAGTGAAAGCTTCAAGTTCTAGTAATGTAGAGTCTTTGGAGGAAGATTACAAGGATCCTGAAGTGGAAGATTTATTGAAGAGGATTGAGAAAGATGCAATGAGATTGAATAAATCTCAAGGGAAGCTTAAGGCATGTATAATTCAAATGGATGTAACAGTTTGTAACAGATATTTGATGGAAATGGCAATCATCAGAGGACAAGAAATATTGGGAAGGTTTGGATCTAATTTCGAAAAGACGCCTTATGGGAAGTTAAGGGTGGATATTAATGGTAAGAGTAGTAATATTACTATGCAGCATGAGTTGGAGGGTGAGAGACAAGATACTAATAGTAATCAGAATCAGATGATTTGGGTAAAGAGTCTTCTCAGGTGGATTGGACGCTCATAA	4197	0.3755	MTISFDFKHDVFLGYFSNNNGTTTNSFVNHLYGGLVNKGINTFIKEYGEIKACIEEIENSRMSIVVLCENYASSTSCLDELVKITQYIDNKSRNVAAIFYKVEPSDIRKQKHSYEVAMAEHEKIYGKESEMIKTWRNALTRVCDLSGVHCKDDVYESVLIEKIVKDTFTKVAPAPVQMKHIVGLDTRFEDVKSVLDIESNDTVRVMGIYGAGGIGKTTFAAYLYDKIRHLFEASAFLLHVREESNKGIKGLEDLQKILLSQLGEDIGTMVGSTFKGSVEIKRRLGKRRVLLVLDDIDDKGNLNLLVGARDWFGSGSRIIITTRDETLLDSHDVEINKYKMEVLTYRDSLELFCWNAFDNNRPAENFEYMSNRAANYANRIPLALCVIGSNLKGKSIEEWESELGKYKMVPHADIQGVLEISYYSLSELERKIFLDCACFFKGEKWVYVERILKGCHYSPSLRVFASKCLMTIDENGCLMMHSLIQDMGREVVRKESPLIPGNRRRLWYHKDILQVLEGNSGSRNIEGIMFHPPTHEVVDQWTNTSFEKMKNLKILIVRNATFSTGPSSLPNSLRLLDWMGFPSKSFPPDFYPEKIVDFKLSHSPLILANPLQTFEDLTFMNLSDCLSITQMPDLSGAKNLRVFTIDRCHKLEGFHKSFGLYMSKLVYLSASECTMLKTFVPRMYFPSLEVISFNFCKRLEHFPDVMRKMDKPLKIHMINTGIKEFPESIDKLTGLEYADMSTCERLINLSRGFLLLPKLTTLKVDGCSQLRKSFRRFKESHSIANGCPNIKELCFSKANLSCEDLYMILEILPKLEYLNVSDNGFVSLPECIKGSSQLKSLDISFCRNLMDIPQLPSSIQKVDARYCHSITPKASSMLWSKVCEEKQRIQVVMPKTEIPNWFYCVGSEDIPVFWARRNFPVIALAFEFGEIKENGEIKMDTFTSEIFPGMSSDKSSHFVGLHLFVEGQEISRKDYHYCIVGEHHVLMCDLRTLFNDEEWQGLDASFGDEWKKIQVQFESQLIINHWRVYVYKQKTKDDDIQFSFPYSTDYVPIPSPNLVPKKSLNQKIKHIQSLDQVEAFGQYLNTFRSKQSATVANELLRWCRYTRGGPPSACVYEASLMQEHEDSVWNAALILEMMRNVVNHISETKVQSAVHLVVELLTTRAQHVKEKGHEVLNINMSMPIILEECECHRFIGSSSQFGSSPTVLTLQQKKTQMGRQREAPSRHYWGSVELKEGDTLVWRIRKGKESMRGSVSNIVVLLKCQHCSLVKASSSSNVESLEEDYKDPEVEDLLKRIEKDAMRLNKSQGKLKACIIQMDVTVCNRYLMEMAIIRGQEILGRFGSNFEKTPYGKLRVDINGKSSNITMQHELEGERQDTNSNQNQMIWVKSLLRWIGRS*	1399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g0939	1398	Pfam	TIR domain	8	175	IPR000157	GO:0007165
	Tpr4g0939	1398	ProSiteProfiles	TIR domain profile.	7	171	IPR000157	GO:0007165
	Tpr4g0939	1398	SUPERFAMILY	L domain-like	530	876	-	-
	Tpr4g0939	1398	Pfam	NB-ARC domain	187	401	IPR002182	GO:0043531
	Tpr4g0939	1398	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	17	1115	-	-
	Tpr4g0939	1398	SUPERFAMILY	"Winged helix" DNA-binding domain	413	517	IPR036390	-
	Tpr4g0939	1398	Gene3D	-	343	431	IPR042197	-
	Tpr4g0939	1398	SMART	till_3	8	145	IPR000157	GO:0007165
	Tpr4g0939	1398	PRINTS	Disease resistance protein signature	205	220	-	-
	Tpr4g0939	1398	PRINTS	Disease resistance protein signature	283	297	-	-
	Tpr4g0939	1398	PRINTS	Disease resistance protein signature	377	391	-	-
	Tpr4g0939	1398	PRINTS	Disease resistance protein signature	833	849	-	-
	Tpr4g0939	1398	Gene3D	-	170	340	IPR027417	-
	Tpr4g0939	1398	Gene3D	-	4	169	IPR035897	-
	Tpr4g0939	1398	Gene3D	Ribonuclease Inhibitor	716	884	IPR032675	-
	Tpr4g0939	1398	Gene3D	Ribonuclease Inhibitor	538	715	IPR032675	-
	Tpr4g0939	1398	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	1115	IPR044974	GO:0006952
	Tpr4g0939	1398	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	147	IPR035897	-
	Tpr4g0939	1398	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	436	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g0939	Tpr-Chr4	9035628	9042317	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g0939	9	810	WRKY Transcription Factor Family	AT4G12020	29.733	5.89e-77	280

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g0939	-		-	gmx:100801337	1512.28