Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0918 ATGGATTTGAGTATGAATTATGGCAATATTGAAGAAAGTGAGTTGTATGATGCTCAAATCCATTTCTACAAACATATACACAACATTCAAAGTTCTATGGCACTCAAATTTGCAGTGGAGTTAGGGATAGCAGATGCAATCCACAACCATGGAAAACCAATGACACTTGTTGAATTAGCTTCAACTTTAAAACTAAACCCATCTAAAGTTAGTATCCTCTATCGAATCATGCGCTTGCTAACACACAATGGTTTCTTCGCAAAAACAACGTCGAAAGCCAAAGCAGGTGAAGAAACAATGTATTCTCTAACACCACCATCAAAGCTTCTCATCAGAGGCAAACCGATGTGTTTAGCATTCTTTGCTGGAGGTCATCCACGTTATATGAACATGTGGAACTACACCAAGAAGTGGTTGCTTGAGGAAAAGGAAGAACTCAGCCTATTTGAGAGTGCAAATGGGGAGACATTCTGGGAAATGCTAAACAAAGATTCTGAATCAGATAACCTGTGTTTTTTTCAAGAGGCCATGGAAGCTGATTCTCATATGTTTAAGCTTGCACTCAAAGACTGCAAGCATGTGTTTGAAGGTTTGGAGACTTTGGTTGATGTGGGAGGTGGGACTGGAGTTGTTGCAAAACTCATTCATGAAGTATTTCCTGATATTAAATACACTGTTTTGGATCAACCACAGGTTGTTGGTAACTTAACTGGAAATGAAAATTTGAACTTTGTTGGTGGAGATATGTTCAAATTTATCCCTCATGCAGATGCTGTTTTACTTAAGTGGATTCTACATGATTGGAATGATGAGCTCTGCTTAAAGATATTGAAGAATAGCAAAGAAGCTATTTCTGGAAAAGGCAAAGATGGAAAGGTTATAATCATTGACATGTCAATTGATGAAACAAGTGATAATCGTGAGTTAACTGAGTTGCAACTGAACTTTGACATGGTAATGCTGACTTTGTACAATGGAAAAGAAAGAGAAAAAAAAGAATGGGAGAAACTCATATATGATGCAGGCTTCGGCAGCTACAAAATTACTCCCATATGGGGTTTCAAGTCTCTCATTGAAGTTTATCCTTAG 1089 0.3765 MDLSMNYGNIEESELYDAQIHFYKHIHNIQSSMALKFAVELGIADAIHNHGKPMTLVELASTLKLNPSKVSILYRIMRLLTHNGFFAKTTSKAKAGEETMYSLTPPSKLLIRGKPMCLAFFAGGHPRYMNMWNYTKKWLLEEKEELSLFESANGETFWEMLNKDSESDNLCFFQEAMEADSHMFKLALKDCKHVFEGLETLVDVGGGTGVVAKLIHEVFPDIKYTVLDQPQVVGNLTGNENLNFVGGDMFKFIPHADAVLLKWILHDWNDELCLKILKNSKEAISGKGKDGKVIIIDMSIDETSDNRELTELQLNFDMVMLTLYNGKEREKKEWEKLIYDAGFGSYKITPIWGFKSLIEVYP* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0918 362 Pfam Dimerisation domain 33 81 IPR012967 GO:0046983
Tpr4g0918 362 Gene3D Vaccinia Virus protein VP39 116 362 IPR029063 -
Tpr4g0918 362 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 7 362 - -
Tpr4g0918 362 SUPERFAMILY "Winged helix" DNA-binding domain 12 114 IPR036390 -
Tpr4g0918 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 361 IPR029063 -
Tpr4g0918 362 PANTHER O-METHYLTRANSFERASE 7 362 IPR016461 GO:0008168
Tpr4g0918 362 PIRSF O-mtase 1 362 IPR016461 GO:0008168
Tpr4g0918 362 Gene3D - 5 110 IPR036388 -
Tpr4g0918 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 362 IPR016461 GO:0008168
Tpr4g0918 362 Pfam O-methyltransferase domain 132 343 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0918 Tpr-Chr4 8779422 8783197 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0918 33 349 Monolignol Biosynthesis Gene Families AT5G54160 33.951 4.70e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0918 K22588 - ag:AAY18581 504.982