Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0899 ATGGAAAATAACGAAGTCAAAGATGAACAACAGGAAATCTACGAATCCTTTATATGCTGCGTTTGCCTGGATCTGTTATACAAGCCCATTGTGCTATCTTGTGGCCACGTATCATGTTTCTGGTGTGTCCATAAATCAATGAATAGTTCGTCGGAATCCCATTGTCCAACTTGTAGGCATACATACTCTCACTTTCCAACAATCTGTCAAATACTTCACTTTTTGCTTCTTAAGACATACCCTGCAGCTTATGAAAGAAGGGAAAATCAGACACTTGAGGAAGAAGAGAAAGAGGATCGTTTCTCCCCTCAATTTATATGTGATCGTCCTGAGAATTCACCTACCAGTACCACCATAAATCAGACGTCTAACTCATGCGGCACAGAATCTTTTGAAAGTATGAAGCAATCAGGGTCTGCAAATCATAATGGCGATGAAGGCATCATTTCTGAATATAATTCTGAAAGGAAACAGCAAATTATAGGGACTCCATCAGTTGAAGGAAAAAGATTGCCTAAAAATGAGCACAATCAGCAACCAAAAATATTAGTTGCAGATTTAAAGTGTCCAATGTGCAAGCAAATGCTCATTCATCCTGTTGGTCTTAATTGTGGGCATGTATACTGTGAAACTTGTATCACCGACTTACCTCATGAGGTGCTTATATGTCAAGTTTGTCAAAGTCCACATCCCGGAGGATTTCCAAAAGTTTGTTTGGCTCTTGACCAATTTTTAGAGGAGCAATTTCCAGAAGAGTACAGACAGAGAAGAGATGCAATTCAACTTAGCCAAATCAAAGTCCAACCTTGTTCTTTGTCCAAGGACAACGGAGAAAAGATAGCTTTGGGGTCTAATCCTGGATTGTTACTTCACAGAGGAGCTGGTTGTGATTTTTGTGGGATGTACCCAATAATAGGGGACAGATATAGATGTGTTGATTGTAAAGAGATTATCGGCTTTGATCTTTGTGGTGATTGCTATAAGAACCGTGTAAAGCGTCCAGGCCGGTTCAACCAGAAGCACACCCCTGACCACAAGTTAGAGCTTGTACGATATCGAAAGATGCTAATTAGCCGTGGACAAGATTCTTCAGATTTAATGGTTATACAGGATGGCACTGATTCCTCTACCGATGAAGAATAA 1143 0.4016 MENNEVKDEQQEIYESFICCVCLDLLYKPIVLSCGHVSCFWCVHKSMNSSSESHCPTCRHTYSHFPTICQILHFLLLKTYPAAYERRENQTLEEEEKEDRFSPQFICDRPENSPTSTTINQTSNSCGTESFESMKQSGSANHNGDEGIISEYNSERKQQIIGTPSVEGKRLPKNEHNQQPKILVADLKCPMCKQMLIHPVGLNCGHVYCETCITDLPHEVLICQVCQSPHPGGFPKVCLALDQFLEEQFPEEYRQRRDAIQLSQIKVQPCSLSKDNGEKIALGSNPGLLLHRGAGCDFCGMYPIIGDRYRCVDCKEIIGFDLCGDCYKNRVKRPGRFNQKHTPDHKLELVRYRKMLISRGQDSSDLMVIQDGTDSSTDEE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0899 380 PANTHER UNCHARACTERIZED 5 365 - -
Tpr4g0899 380 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Tpr4g0899 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Tpr4g0899 380 Pfam Zinc finger, C3HC4 type (RING finger) 19 58 - -
Tpr4g0899 380 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Tpr4g0899 380 Pfam Zinc finger, ZZ type 291 332 IPR000433 GO:0008270
Tpr4g0899 380 SUPERFAMILY RING/U-box 285 350 - -
Tpr4g0899 380 SMART ring_2 19 58 IPR001841 -
Tpr4g0899 380 SMART ring_2 189 226 IPR001841 -
Tpr4g0899 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 256 IPR013083 -
Tpr4g0899 380 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Tpr4g0899 380 ProSiteProfiles Zinc finger ZZ-type profile. 291 355 IPR000433 GO:0008270
Tpr4g0899 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 5 365 - -
Tpr4g0899 380 SUPERFAMILY RING/U-box 182 249 - -
Tpr4g0899 380 SUPERFAMILY RING/U-box 9 68 - -
Tpr4g0899 380 Gene3D - 289 351 IPR043145 -
Tpr4g0899 380 CDD RING-HC 19 58 - -
Tpr4g0899 380 Pfam RING-type zinc-finger 189 213 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0899 Tpr-Chr4 8554162 8560103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0899 1 59 C3H Transcription Factor Family AT1G74990 38.333 1.36e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0899 - - mtr:MTR_4g022320 600.512