Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0898 ATGGAAAACAACGAATTCAAAGATGAACAACAGGAAATCTACGAATCCTTTATCTGCTGCGTTTGTCTGGATCTGTTATACAAGCCCATTGTGCTAGCTTGTGGCCATGTATCATGTTTCTGGTGTGTCCATAAATCAATGAATGATTCGTCCGAATCCCATTGTCCAACATGTAGGCATACATACTATCACTTTCCAACAATCTGTCAACTGCTTCACTTTTTGCTTCTTAAGACATATCCCGCAGCTTACAAAAGAAGGGAAAATCAGACACTTGAGGAAGAAGAGGAAGAGGATTGTTTCTCCCCTCAATTTATATGTGATCGTCCTGAGAATTCGCCTACCAGTACTACCATAAATCAGACGTCTAACTCATGCAGCACAGAATCTTTAGAAAGTATGGAGCAATCACGGTCTGCAAATCATAACGGCGATGAAGGCATCATTTCAGTTGAAGGAAAAAAATTGCCTCAAAATGAGCACAATCAGCAACCAAAAATATTAGTTGCAGATTTAACATGTCCAATGTGCAAGCAAATGCTCATTCATCCTGTTGGTCTTAATTGTGGACATGTATACTGTGAGACTTGTATCACCGACTTACCTCATGAGGTGCTTATATGTCAAGTTTGTCAAAGTCCACATCCTGGAGGATTTCCAAAAGTTTGTTTGGCTCTTGACCAATTTTTAGAGGAGCAATTTCCAGAAGAGTACACACTGAGAAGAGATGCAATTCAACCTAGCCAAATCAAAGTCCAACCTGAGACCACATCTTCTTGTTCGTTGTCCAAGGACAATGGAGAAATAATAGCTTTGGGGTCTAATCCTGAATTGTTAGTTCACGAAGGAGCTGGTTGTGATTTTTGCGGGATGTACCCAATAATAGGGGACAGATATAAATGTGTTGACTGTAAAGAGATTATCGGCTTTGATCTTTGTGGTGATTGCTATAAGAACCGTGCAAAGCGTCCAGGCCGATTCAACCAGAAGCACACCCCTGACCACAAGTTAGAGCTTGTACTGGCTGATGACACTGATTTTTCAGATTTAGAGCTTGTACAGGATGAGGATGACACTGATTCTTCAGATTTAATAGTTATACAGTATGACACTGATTCCTCTACTGATGAAGAATAA 1137 0.4028 MENNEFKDEQQEIYESFICCVCLDLLYKPIVLACGHVSCFWCVHKSMNDSSESHCPTCRHTYYHFPTICQLLHFLLLKTYPAAYKRRENQTLEEEEEEDCFSPQFICDRPENSPTSTTINQTSNSCSTESLESMEQSRSANHNGDEGIISVEGKKLPQNEHNQQPKILVADLTCPMCKQMLIHPVGLNCGHVYCETCITDLPHEVLICQVCQSPHPGGFPKVCLALDQFLEEQFPEEYTLRRDAIQPSQIKVQPETTSSCSLSKDNGEIIALGSNPELLVHEGAGCDFCGMYPIIGDRYKCVDCKEIIGFDLCGDCYKNRAKRPGRFNQKHTPDHKLELVLADDTDFSDLELVQDEDDTDSSDLIVIQYDTDSSTDEE* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0898 378 Gene3D - 276 340 IPR043145 -
Tpr4g0898 378 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Tpr4g0898 378 Pfam Zinc finger, ZZ type 281 320 IPR000433 GO:0008270
Tpr4g0898 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 240 IPR013083 -
Tpr4g0898 378 MobiDBLite consensus disorder prediction 353 378 - -
Tpr4g0898 378 Pfam Zinc finger, C3HC4 type (RING finger) 19 58 - -
Tpr4g0898 378 SUPERFAMILY RING/U-box 12 68 - -
Tpr4g0898 378 Pfam RING-type zinc-finger 174 198 IPR027370 -
Tpr4g0898 378 SUPERFAMILY RING/U-box 275 340 - -
Tpr4g0898 378 ProSiteProfiles Zinc finger ZZ-type profile. 281 345 IPR000433 GO:0008270
Tpr4g0898 378 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Tpr4g0898 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Tpr4g0898 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 112 362 - -
Tpr4g0898 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 6 135 - -
Tpr4g0898 378 SMART zz_5 280 327 IPR000433 GO:0008270
Tpr4g0898 378 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
Tpr4g0898 378 PANTHER UNCHARACTERIZED 6 135 - -
Tpr4g0898 378 PANTHER UNCHARACTERIZED 112 362 - -
Tpr4g0898 378 SUPERFAMILY RING/U-box 167 234 - -
Tpr4g0898 378 SMART ring_2 174 211 IPR001841 -
Tpr4g0898 378 SMART ring_2 19 58 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0898 Tpr-Chr4 8543464 8560092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0898 1 59 C3H Transcription Factor Family AT1G74990 38.333 4.25e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0898 - - mtr:MTR_4g022320 580.482