Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0881 ATGTTTCTTGATGAACAAATATTACCGTTAGACAAATCCCACCATTATAAATACATTCCTTTCAGTTCACTGTTCACTCACTCACTCACTCACTCATCACTCCCTCTAAGTCTAATACTCTTCGTTGGGGCTGCAATTACAACAACGTTTGAGGATTCTTCTTCTATCCTCTCTATTTCTCTTTCCACTTTGCGACCCATCTCAAAAATTCATTCTTTCTCAAAAATTCATCCATTCTCACAAATTTATTCATTCATTTCAAATTCAATGACTTCTTTCACTAACAATCCATCCTTCCCGGTTGGTCTCAAAGTTCTTGCAGTTGATCACGACATCGGTGCTCTCTGCACTATACAGGACATATGCAATGGCTTGTGCTATCAAGTGATCACTTGTTGCACTATTTCTGATGCATGGAATTACTTGTTCAACCAAAACTTTGATATCATTCTTATTGAAGCTAATATGCCAAGCAATGATACTTTTGATTTTGTTGGACAAATTACTTCACATTTTCCTGTCATCATGATGTCTCTTGATCCCACGCCTTCTTCCGTTATGGATTCTATAACCCAAGGGGCTTGCGCATTCTGGTCCAAGCCCTTGGATGAGAACCAATTTAAGATCATGTGGCAACATCTTGTACGGAAGGCTTTGAGCGAAACTCATGAACTTCCTCAAACCTTGGAGGTTAAAGGCGGAAAAAAACGAGGAAGAGAAGATGTTGATTTACCAAAACAACTGCTTCCAAAGAAAAGCCGTTTGTCATGGACACCCGACTTGGACAAACAATTCTTATCGGCTGTGAATCAACTCGGGGTTAATAGTATTAATGCAACACCCAAAAAAATTCTTAAGCTGATGAACTTTCCCGATTTGACAACAGGGCAAGTAGCTAGCCATTTACAGAAATATAGGAAGTATTTACAAGGGGAAATCAAAAAATCAAAGTTCAGTAGGCTATCTGCTTTTCAAGGTCACGATGAAATTCCTACACAACAACAACATTTGACCGAAATTGGCGAATGCGACATCTTTTTGGACCTGTCCGAATTGTTCCCAGATCTTGTCGATAACTTATAA 1083 0.3887 MFLDEQILPLDKSHHYKYIPFSSLFTHSLTHSSLPLSLILFVGAAITTTFEDSSSILSISLSTLRPISKIHSFSKIHPFSQIYSFISNSMTSFTNNPSFPVGLKVLAVDHDIGALCTIQDICNGLCYQVITCCTISDAWNYLFNQNFDIILIEANMPSNDTFDFVGQITSHFPVIMMSLDPTPSSVMDSITQGACAFWSKPLDENQFKIMWQHLVRKALSETHELPQTLEVKGGKKRGREDVDLPKQLLPKKSRLSWTPDLDKQFLSAVNQLGVNSINATPKKILKLMNFPDLTTGQVASHLQKYRKYLQGEIKKSKFSRLSAFQGHDEIPTQQQHLTEIGECDIFLDLSELFPDLVDNL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0881 360 Pfam Response regulator receiver domain 105 207 IPR001789 GO:0000160
Tpr4g0881 360 Gene3D - 101 221 - -
Tpr4g0881 360 SMART REC_2 103 211 IPR001789 GO:0000160
Tpr4g0881 360 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 252 307 IPR006447 GO:0003677
Tpr4g0881 360 SUPERFAMILY Homeodomain-like 250 310 IPR009057 -
Tpr4g0881 360 Pfam Myb-like DNA-binding domain 255 306 IPR001005 -
Tpr4g0881 360 ProSiteProfiles Response regulatory domain profile. 104 215 IPR001789 GO:0000160
Tpr4g0881 360 Gene3D - 249 311 - -
Tpr4g0881 360 PANTHER TWO-COMPONENT RESPONSE REGULATOR 99 319 IPR045279 GO:0009736
Tpr4g0881 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 310 IPR017930 -
Tpr4g0881 360 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 99 319 - -
Tpr4g0881 360 SUPERFAMILY CheY-like 102 219 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0881 Tpr-Chr4 8410879 8412823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0881 99 310 Response Regulator Gene Family AT2G25180 35.950 1.80e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr4g0881 Response_reg 2.1e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0881 - K14491 mtr:MTR_4g021760 226.868