Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0877 ATGATGTTGAATTGTTCGTCAAATGTTTCAGCTGAAGTTGGTGGTTGTTCGAATGAAGAACTATGGAAAGCGTGTGCTGGACCATTAGTGGATGTTCCTCGTACTGGTCAAAGGGTTTTATATTTCCCTCAAGGACACATGGAACAATTAGAGGCTTCTACTAATCAAGAACTGAATCAGAATATCCCTTTGTTGAAACTTCCTACACAGATCCTTTGTCGCATCGTGAATATGAATTTATTGGCTGAACAAGAAACGGATGAGGTTTATGCACAGATTACTTTAGTTCCGGAACCAAATCAAGATGAGCCAACAATTCCTGATCCGGTCGCTGATGAACCTCCGAGGCCGAAGATTCACTCATTCTGCAAGATCTTAACTGCTTCGGATACTAGCACACATGGTGGCTTCTCTGTTCTCAGAAAACATGCTACAGAATGCCTTCCTCCTTTGGATATGTCACAACCGACACCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTACTCACAACTGGATGGAGTACTTTTGTGACTTCTAAAAGATTAGTTGCTGGTGATACCTTTGTGTTTTTGAGAGGGGAAAACGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAGCATGTCATCATCTGTGATTTCTAGCCAAAGCATGCACCTTGGAGTTCTTGCAACTGCCTCGCATGCTGTTGCATCTCAGACACTTTTTGTTGTATATTATAAGCCGAGGACGAGCCAGTTCATCGTAAGCGTGAACAAGTACTTGGCAGCTGTGAATAATAAGTATACTGTCGGCATGAGGTTCAAGATGAGGTTTGAGAGTGATGATTCTGCTGAGTCTGACAAAAGATTTTCCGGTACCATAATTGGAGTGGCCGATATGTCTCCCCATTGGCCAAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTGCAGCTATTTCAAGACCTGACAGGGTTTCACCATGGGAGATAGAACCGTTTGTTTCCTCAGCTTCGACACCCTCAGTGCAACCTACCACTGTGAAGACAAAAAGGCCTCGACCACCGAGTGAAATTCCCGACGTTGACACAACATCGGCTGCCTCTATCTACTGGGATGCTAGACTGACACCAACCGATAAGACACAACGTAGCGTTTTAGCTGAAAGCCAAAAAAGCGATAACACTGGTTTGTGGCATCTTAAGAAAACTGATACTATGAATAGTAAAAGCAACAGCAACACTTTATTTAGGAATCATACAGAAGGAAGTTGGCTGTCTTCTCCCCGTTCTAGCTGTCCTTCTCATTTGCTTCACGACACGACCGATGATCGTGTGCACGATCAAGTTGACAAGGACAACAAAGCCGAAACTGCTACAAGTTATCGATTGTTTGGAATCGATCTTATTGATCATTCCAAAAATCCGGCTGCTCTAGGGAAAGGATCATCACATGTCGCAAACATAACTGGAGTTACCACTGAAGTTAGTTCCAGTACTTTGTCCAGCATCGATACTGGCCGTAAGTCTGACATCTCAAAGGCTGTTTCTATGGAGAAGAAACAAGAATTGCAACTAGTATCACCGAAGGAGCCTCAAAGCAAGCAAATTTGTAGCAGAAGCCGCACCAAGGTTCAAATGCAGGGTGTGGCAGTTGGACGCGCTGTGGATTTGGCTACATTGAATGGGTATGATCAACTTATTGGTGAATTGGAAGAGTTGTTTGACATCAAGGGACAGCTTCAACATCGGAATACATGGGAAATTGTCTTCACTGATGATGAAGGAGATATGATGCTCGTCGGAGATGATCCATGGCCTGAATTTTGTAACATGGTGAGAAGAATCTTCATTTGTTCAAGCCAAGATGTGAAGAAGATGAAAACAGGAAGCAAACTTCCAATCTATTCTTCGATCGAAGAAGGGACTGTAATAAGTTCAGACACAACTCAAACATGA 2013 0.4347 MMLNCSSNVSAEVGGCSNEELWKACAGPLVDVPRTGQRVLYFPQGHMEQLEASTNQELNQNIPLLKLPTQILCRIVNMNLLAEQETDEVYAQITLVPEPNQDEPTIPDPVADEPPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSSMSSSVISSQSMHLGVLATASHAVASQTLFVVYYKPRTSQFIVSVNKYLAAVNNKYTVGMRFKMRFESDDSAESDKRFSGTIIGVADMSPHWPNSKWRSLKVQWDEPAAISRPDRVSPWEIEPFVSSASTPSVQPTTVKTKRPRPPSEIPDVDTTSAASIYWDARLTPTDKTQRSVLAESQKSDNTGLWHLKKTDTMNSKSNSNTLFRNHTEGSWLSSPRSSCPSHLLHDTTDDRVHDQVDKDNKAETATSYRLFGIDLIDHSKNPAALGKGSSHVANITGVTTEVSSSTLSSIDTGRKSDISKAVSMEKKQELQLVSPKEPQSKQICSRSRTKVQMQGVAVGRAVDLATLNGYDQLIGELEELFDIKGQLQHRNTWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMKTGSKLPIYSSIEEGTVISSDTTQT* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0877 670 PANTHER AUXIN RESPONSE FACTOR 9 19 657 - -
Tpr4g0877 670 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Tpr4g0877 670 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Tpr4g0877 670 MobiDBLite consensus disorder prediction 354 382 - -
Tpr4g0877 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 657 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g0877 670 Pfam AUX/IAA family 537 642 IPR033389 -
Tpr4g0877 670 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr4g0877 670 SUPERFAMILY CAD & PB1 domains 559 634 - -
Tpr4g0877 670 SMART B3_2 122 224 IPR003340 GO:0003677
Tpr4g0877 670 Gene3D - 554 646 - -
Tpr4g0877 670 SUPERFAMILY DNA-binding pseudobarrel domain 111 251 IPR015300 -
Tpr4g0877 670 ProSiteProfiles PB1 domain profile. 558 639 IPR000270 GO:0005515
Tpr4g0877 670 Gene3D - 119 223 IPR015300 -
Tpr4g0877 670 MobiDBLite consensus disorder prediction 354 369 - -
Tpr4g0877 670 CDD B3_DNA 120 222 IPR003340 GO:0003677
Tpr4g0877 670 Gene3D - 283 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0877 Tpr-Chr4 8347098 8351649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0877 19 651 B3 DNA Binding Superfamily AT4G23980 60.312 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr4g0877 AUX_IAA 4.3e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0877 K14486 - gmx:100779003 1020.38