Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0864 ATGGAACAGGATCAATGTTGGATACAATTACAAACAAAGAGAAAGTACTCAATGAGTAATTCAAATCTTGTTAACCCTTCTTCTTCTTCTTGTTATGGTGATTCATGGGAAGAACAAGCTTTTGCTGAAGATGCAGCTGGAGTTTCACTTGGTGGATGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGTAGAAGAGAGTTTAGATCAGCACAAGCATTAGGTGGTCATATGAATGTTCATAGAAAAGATAGAGCAAGATTAAAAGAATCTTCTTCTAGTCCACAAAATGAAAAAATTCTTTATCATCATCATCATCATGAACTTGATCAAAATCATCTTCAAAAGCCAATTATTCGAAGTGCTAATTCTTTGGCTTATAATAACTTATTCCCTAATTCTCCTCTTTGTGGTTTGGTTTATAAAACTAATAACCCTAATTATGATCTTGATCATTTTGTTGCTTCAACTTCATCACCCTCACCTTCTAAAGCTTTATTAAGAGATGAAACCCTAATTCCATTTTATGATTCTTCTATTCCTCATAAGATGATTTCTCCTCTTAATTCTTCTGAATCGTGGCGGAATTTATCTGCGGATGATAGATTATGCTCAACAAATTTTCAAATTGAAGTTGATAATATTCATGAAAAAGTCTCCAAGGGAATTATGGATTCTACGTTTAGAGGTAAAGGAGGTAACAATGATGATGATGAAAGTGATGTAGCTATGAGCTTGAATTTGGTTTTGTGTAGAGCTAATCCATTTGTGGAATTTGAAAGTACTAAGAAGGAAGAAGATTTAAATTGTAAGAAGAGGAAGAAAATAGATTATTCCACAAATCTATTATTCTCAAAGTCAAGTTCTTTTGATAGACACCAACTTATGCAAGCAAACATGTTTGAGCTTAACCCTAATTCCATTGATGAGCTAGATCTGGAGTTAAGACTTGGTACAAAGTCCAAGGTATAG 975 0.3333 MEQDQCWIQLQTKRKYSMSNSNLVNPSSSSCYGDSWEEQAFAEDAAGVSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKESSSSPQNEKILYHHHHHELDQNHLQKPIIRSANSLAYNNLFPNSPLCGLVYKTNNPNYDLDHFVASTSSPSPSKALLRDETLIPFYDSSIPHKMISPLNSSESWRNLSADDRLCSTNFQIEVDNIHEKVSKGIMDSTFRGKGGNNDDDESDVAMSLNLVLCRANPFVEFESTKKEEDLNCKKRKKIDYSTNLLFSKSSSFDRHQLMQANMFELNPNSIDELDLELRLGTKSKV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0864 324 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 323 - -
Tpr4g0864 324 SUPERFAMILY beta-beta-alpha zinc fingers 57 86 IPR036236 -
Tpr4g0864 324 Pfam C2H2-type zinc finger 60 84 - -
Tpr4g0864 324 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Tpr4g0864 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Tpr4g0864 324 SMART c2h2final6 60 82 IPR013087 -
Tpr4g0864 324 PANTHER OS07G0101800 PROTEIN 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0864 Tpr-Chr4 8165576 8167310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0864 35 97 C2H2 Transcription Factor Family AT2G37740 68.056 4.05e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g0864 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0864 - - mtr:MTR_4g021270 419.468