LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g0821	ATGGCAGCTACATTGTATAACCTTAAATCTGAATCTGGATTGAAGAAGCTTAATGAATATCTTCTCACTCGCAGTTATATCTCGGGATACCAAGCTTCAAAAGATGATATCACCGTTTACGCAGCTTTGCCATCAGTTCCATCAAGTGAATATGTGAATGTGGCTAGATGGTACAAGCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGTGAGGGATCTGGTGTGACCGTGGAATCTTCCCTCGTTGCTGAAGAGGCTGTTGCCACTCCTCCAGTTGCTGACACAAAGGCTGCCGAAGCCGAGGATGACGATGACGACGATGTGGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCCGAGGAACGGGCAGCAGCCGTGAAGGCATCAGGCAAAAAGAAAGAAAGTGGGAAATCATCTGTATTGTTGGATGTGAAGCCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTAAATTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTGCAAATTATGCTTACTATTGTGGATGATTTGGTTTCCGTTGACAACATGGTTGAGGATTATCTTACTGTTGAGCCCATCAATGAGTATGTCCAGAGTTGTGACATTGTTGCCTTCAATAAAATATAA	696	0.4353	MAATLYNLKSESGLKKLNEYLLTRSYISGYQASKDDITVYAALPSVPSSEYVNVARWYKHIDALLRISGVSGEGSGVTVESSLVAEEAVATPPVADTKAAEAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVKLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKI*	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g0821	231	CDD	EF1B	140	231	IPR014038	GO:0003746\|GO:0006414
	Tpr4g0821	231	SMART	EF1_GNE_2	142	231	IPR014038	GO:0003746\|GO:0006414
	Tpr4g0821	231	Pfam	EF-1 guanine nucleotide exchange domain	144	231	IPR014038	GO:0003746\|GO:0006414
	Tpr4g0821	231	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	231	-	-
	Tpr4g0821	231	Coils	Coil	114	134	-	-
	Tpr4g0821	231	PANTHER	ELONGATION FACTOR 1-DELTA 1-RELATED	1	231	-	-
	Tpr4g0821	231	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	106	114	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Tpr4g0821	231	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	220	231	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Tpr4g0821	231	SUPERFAMILY	GST C-terminal domain-like	8	67	IPR036282	-
	Tpr4g0821	231	SUPERFAMILY	eEF-1beta-like	139	231	IPR036219	-
	Tpr4g0821	231	Gene3D	-	135	231	IPR014717	-
	Tpr4g0821	231	Gene3D	-	2	79	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g0821	Tpr-Chr4	7683042	7685589	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g0821	3	231	Eukaryotic Initiation Factors Gene Family	AT2G18110	80.435	2.30e-115	327

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g0821	K03232		-	gmx:100777627	322.013