Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0809 ATGGCTAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAACCAATCTAATGAACCTTTACTTCCTTTTTATGATTCTTCTTCTTTCATTACTAATTTTAACCAACAACAAGGTTTGAAACAAAATTCTTGTTCTTCTTCTAATTCTATGAAGGATTTAGAATGTTCTAATTTGATGATGCGTTTTTCAAGAGAAGAAGGAAAAAGGGTAATGAATAATAATATTTCTTCTACTTCTTCTAATCATCCTTATTTTGAAACTTTGAATCATAATAATCAAGCAAATAATAATATTAATAACCCTTTTTTCTATCAAGCACAAAACATTCAAAATCTTAGAAATTTTGATGAACAACAACATAGTAGTACTAGTACTATGATGTTGAATAATCATGAACCTTTGTCTTTGTCACTTTCATCAAATAAAAGTGTTAGTAGTAATTTACCTTTGGAGTTAAATCTACAAAGATATGGATCTATGATTTATGGTGGTGGAGGTATGATTCAAGGGTTAGTTGAAGGTGGTGGAGGAGGAGGAGGAAGTGGTGGTTCAGTTCCATTTACTGGATATGCTTCTGTTTTGAAGGATTCTAGGTTTTTGAAACCAGCTCAAGAATTATTGGAAGAGATTTGTGATGTTGGAGGAAGAGGTTTTTGTAGTGAGAAAATTGTGGTTTTGGCTGATTCATCTTTGATGATGGAATCACCTTTGGAAAGATTGAGTGAAGAAGATCCATTTGGTGATGATGGTCGAAATAAGTCAAGATTATTGACTATGCTTGATGAGGTTTACAAGAGGTACAGGCAATACTACCAACAGATGCAATCGGTAGTAACATCATTTGAGTATGTTTCGGGCCTCAACAATGCAGCTCCTTATGCAAGTTTGGCGATAAAAGCCATGTCAAAACATTTTCGGTGTTTGAAGAAGGCAATTACTGACCAGCTTCAGTATTCCAATAAGGCTCATTTTCACACAAGCAATAGGAAGGATGAATCTCCGAGATTTGGCAATAGTGAAAGAGGAGGTCCTTACGGCCATAGGTCAGGTTTTCTTGAGCAGCAACAACCTGTGTGGCGTCCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCTTGGCTCTTTGAGCACTTTTTGCATCCCTATCCTACCGATACCGACAAAATAATGTTGGCTAAACAAACCGGTCTATCACGTAGCCAAGTGTCTAATTGGTTCATAAATGCAAGAGTAAGACTATGGAAACCAATGGTAGAAGAAATACACATGCTAGAAACAAGGCAAACTCCAAAAGATTCACAAAAGGAAGAAAGTTCTAGGAACAAATCAAGTGATCATCATCATTTGCCTTCGGATACTTCTCTACTTTCCGATAATCCGTCGACCTCGACAGATAAGTTTCAAGACGTTGCTTACAAGCGTGCCATAAACGAAATACCGAACATACCAATTAGGAATCAAGCACAACAACATCATCAACAACAACAAATGAATCTACCTTTTCAACAAGTTGGTGTTGGAATGAACATAGGTAGTGGAAGCAACAACAATAATAATAGTAATAGTAATGTTTCATTGACATTAGGACTTTATCAAAATCATGGAATTGGTTTAGCTGAACCATTTCCATTAAGTGCTGCTCAAAGATTTGGTCTTGGGCTTGAAACCAATAATGAAGGTTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGTAGAGATGTTATTGGAGGTCAAATGTTTCATGACTTTGTAGGATGA 1818 0.3647 MASDEGFEGYHVPQQSRRDKLRVVVAQNQSNEPLLPFYDSSSFITNFNQQQGLKQNSCSSSNSMKDLECSNLMMRFSREEGKRVMNNNISSTSSNHPYFETLNHNNQANNNINNPFFYQAQNIQNLRNFDEQQHSSTSTMMLNNHEPLSLSLSSNKSVSSNLPLELNLQRYGSMIYGGGGMIQGLVEGGGGGGGSGGSVPFTGYASVLKDSRFLKPAQELLEEICDVGGRGFCSEKIVVLADSSLMMESPLERLSEEDPFGDDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQYSNKAHFHTSNRKDESPRFGNSERGGPYGHRSGFLEQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQTPKDSQKEESSRNKSSDHHHLPSDTSLLSDNPSTSTDKFQDVAYKRAINEIPNIPIRNQAQQHHQQQQMNLPFQQVGVGMNIGSGSNNNNNSNSNVSLTLGLYQNHGIGLAEPFPLSAAQRFGLGLETNNEGYVMSGFESQNRHFGRDVIGGQMFHDFVG* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0809 605 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Tpr4g0809 605 CDD homeodomain 373 434 IPR001356 GO:0003677
Tpr4g0809 605 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 579 - -
Tpr4g0809 605 SMART HOX_1 373 437 IPR001356 GO:0003677
Tpr4g0809 605 Pfam Associated with HOX 207 327 IPR006563 -
Tpr4g0809 605 MobiDBLite consensus disorder prediction 441 469 - -
Tpr4g0809 605 SMART prehox3 202 328 IPR006563 -
Tpr4g0809 605 MobiDBLite consensus disorder prediction 441 479 - -
Tpr4g0809 605 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Tpr4g0809 605 Gene3D - 376 438 - -
Tpr4g0809 605 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 27 579 - -
Tpr4g0809 605 SUPERFAMILY Homeodomain-like 375 440 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0809 Tpr-Chr4 7505585 7510769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0809 136 605 Homeobox Transcription Factor Family AT5G02030 47.571 8.15e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tpr4g0809 POX 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0809 - - cam:101498314 837.025