Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0806 ATGGAACAAGAAGAACCTAACGTTACGGCGGTCCCCGCCGGAAGCAGCGATGAAGCTTTACTCGCATTAGGTGAAGATGATGTCAGCAACGGTAACAAAGTTAAAGGTCCTTGGTCTCCTGAAGAAGACGCCGTTCTCAGCCGTCTTGTTAGTCAGTTCGGTGCTAGAAATTGGAGTCTCATCGCTCGTGGGATCTCTGGAAGATCCGGTAAGTCATGTCGTCTCCGCTGGTGTAATCAACTTGACCCTTCCGTTAAACGCAAGCCCTTCACTGATGAGGAGGACCGGGCTATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAACTCTACTTTGAGGCGTCGGGGAATTGACCAGATTAGATTAGAATCTGGTATCATGGTGGAAGCCAAAGCATCATCGGAAGAAACTCTATCATGTGGAGATGTTAATTCTTTGAAATCCTCAGAAGGAAGAGATGTTAGCTCTATGGAGATTGTGGCCGGTAAACATGAAGGCAATGCAAGGACTGATGAAGTCAGGGATCCTCCGACCCTTTTTAAGCCTGTCGCACGTGTAAGTGCTTTTAACGTGTACAACACTTTCAATGGTTCACAGCCTTCAACATCAGTTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATCCGCCAAAATCAGATGCGGAAATTTGTAAAATGCTCAACAGAACTATTGGTGACCGGTCGGTGCCTAACCAGTGTGGTCATGGATGCTGTTCTTCTCTAAATGGTAACAGCTCAAAAATCTCTCTGTTGGGACCAGAATTCATTGAGTATTCAGAACCTCAGTCTTTCCCAAGTTTTGAGCTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGTGATACTGCAGGCAGGGTTAATATGTAA 996 0.4558 MEQEEPNVTAVPAGSSDEALLALGEDDVSNGNKVKGPWSPEEDAVLSRLVSQFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRAIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIDQIRLESGIMVEAKASSEETLSCGDVNSLKSSEGRDVSSMEIVAGKHEGNARTDEVRDPPTLFKPVARVSAFNVYNTFNGSQPSTSVPRPVPMQGPILHPPKSDAEICKMLNRTIGDRSVPNQCGHGCCSSLNGNSSKISLLGPEFIEYSEPQSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDTAGRVNM* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0806 331 CDD SANT 89 132 IPR001005 -
Tpr4g0806 331 Pfam Myb-like DNA-binding domain 38 96 - -
Tpr4g0806 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Tpr4g0806 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 81 IPR017930 -
Tpr4g0806 331 PANTHER MYB PROTEIN-RELATED 14 314 - -
Tpr4g0806 331 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Tpr4g0806 331 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Tpr4g0806 331 MobiDBLite consensus disorder prediction 1 26 - -
Tpr4g0806 331 CDD SANT 37 79 IPR001005 -
Tpr4g0806 331 PANTHER - 14 314 - -
Tpr4g0806 331 Gene3D - 89 135 - -
Tpr4g0806 331 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Tpr4g0806 331 SMART sant 34 83 IPR001005 -
Tpr4g0806 331 SMART sant 86 134 IPR001005 -
Tpr4g0806 331 Gene3D - 34 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0806 Tpr-Chr4 7475617 7481004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0806 32 329 MYB Transcription Factor Family AT3G09230 52.484 1.35e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g0806 Myb_DNA-bind_6 7.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0806 K09422 - gmx:100813406 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0806 4 7475617 7481004 Tpr4g0806 4 7475617 7481004 ECH