Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0746 ATGATTACTGAAACATCCGAAGCTGATTGCGCTGTTCTCATCATTGATTACACAACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAACATGCCTTTCCTTGCTTTCACCCTTGGGGAAGTAACAATATTGAAATCAAGATCACCCTGAAGAGTTCTGACGGTGAGAGCTTTGAGGTTGACGAGGCGGTGGCGTTGGAGTTGCAAACAATCAAGCATATGATTGTGGAAAATTGTGCTGACGAAGGAATCCCTCTTCCAAACGTGACAAGCAGGATCTTGACAAAGGTTATTGAGTATTGCAAGAAGCATGTTGAGGTTGCGCGTTGGGAAGAAGAAAAATCTTGTAGTAATGAGAATGATCTTAAGGCTTGGGACGCTGATTTCGTCAAAGTTGATAATGATACGCTTTGCAAACTCCTTGCGGCTGCATACGATTTAAACATCAAGAGTCTGCTAGATCTTACACATCATACTATATCGGACATAATGAATGGTAAGACACCGGACGAGATTCGTAAGTTATTCAACATTAAGAATGATTTCACTCCGGAGGAAGAGGAAGAAATTCGTCTTGAAAACCAATGGGCATTTGAATGA 612 0.4199 MITETSEADCAVLIIDYTTGGFEAGISKDGQTREHAFPCFHPWGSNNIEIKITLKSSDGESFEVDEAVALELQTIKHMIVENCADEGIPLPNVTSRILTKVIEYCKKHVEVARWEEEKSCSNENDLKAWDADFVKVDNDTLCKLLAAAYDLNIKSLLDLTHHTISDIMNGKTPDEIRKLFNIKNDFTPEEEEEIRLENQWAFE* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0746 203 CDD BTB_POZ_SKP1 51 168 - -
Tpr4g0746 203 Pfam Skp1 family, dimerisation domain 154 201 IPR016072 GO:0006511
Tpr4g0746 203 Gene3D Potassium Channel Kv1.1; Chain A 45 203 IPR011333 -
Tpr4g0746 203 PANTHER PUTATIVE-RELATED 51 203 - -
Tpr4g0746 203 PANTHER SKP1 51 203 IPR016897 GO:0006511
Tpr4g0746 203 Pfam Skp1 family, tetramerisation domain 51 109 IPR016073 GO:0006511
Tpr4g0746 203 SUPERFAMILY POZ domain 51 110 IPR011333 -
Tpr4g0746 203 SMART skp1_3 49 153 IPR001232 GO:0006511
Tpr4g0746 203 SUPERFAMILY Skp1 dimerisation domain-like 126 201 IPR036296 GO:0006511
Tpr4g0746 203 Gene3D - 1 41 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0746 Tpr-Chr4 6969729 6971275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0746 1 40 Eukaryotic Initiation Factors Gene Family AT5G60390 85.000 1.22e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0746 K03094 - gmx:100809769 228.409