Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0739 ATGGAAATGGGGTCAAGTCCTCGCACCGTTGAAGAGATCTTCAAAGATTTCAGTTCTCGTAGAGATGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAGTTCTACGCACTCTGTGATCCAGATAAGGACAACTTGTGTCTCTATGGACATTCAAATGAATCATGGGAAGTGACTCTTCCTGCAGAGGAAGTTCCACCTGAGCTTCCAGAGCCAGCTCTCGGAATCAATTTTGCAAGGGATGGCATGAACCGTAGGGACTGGCTTTCCTTGGTTGCTGTGCACAGTGATTCTTGGTTGCTTTCCGTTGCCTTTTATCTCGGAGCTCGGCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGACCTTCCAACTGTGTTTGAAGTTGTAACTGAGAGGAAGCCAATAAAGGACAAGCCAACTGTAGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGAGATCAAATGACGGGCAAGTTAAAAGCATCCCAAAGTTGGCAGATGATCAAGGTTACGAGGAGGAGGAAGACGAGCATAGCGAAACCCTTTGCGGGACCTGCGGTGGAAACTACAATGCTGATGAATTTTGGATTGGCTGTGATATTTGCGAGAGGTGGTACCACGGGAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATTAAGAGGGGCAGACCCTAA 723 0.4633 MEMGSSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHSNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSNDGQVKSIPKLADDQGYEEEEDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSIKRGRP* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0739 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Tpr4g0739 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Tpr4g0739 240 CDD PHD_AL_plant 186 236 IPR044104 -
Tpr4g0739 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Tpr4g0739 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
Tpr4g0739 240 SMART PHD_3 186 234 IPR001965 -
Tpr4g0739 240 MobiDBLite consensus disorder prediction 140 175 - -
Tpr4g0739 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 239 - -
Tpr4g0739 240 MobiDBLite consensus disorder prediction 148 162 - -
Tpr4g0739 240 Pfam PHD-finger 187 234 IPR019787 -
Tpr4g0739 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Tpr4g0739 240 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0739 Tpr-Chr4 6918777 6921993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0739 5 239 Alfin-like Transcription Factor Family AT5G05610 77.966 2.41e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tpr4g0739 Alfin 5.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0739 - - pvy:116115131 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0739 4 6918777 6921993 Tpr4g0739 4 6918777 6921993 ECH
Tpr6g2285 6 24812098 24815225 Tpr4g0739 4 6918777 6921993 PCT