Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0701 ATGATAGTTGCTATGGACTTGAATGCGTCTCCTGTACCGGAGGAAGATGATGATGTTTTTGAGGAGAGGGCACGTGTTCCAGATTATATTCCACCTGAAGATCGCATAGAAAGTGGAGCTGAAATCGCACGCCGGGAGCGTGAGGAAAGAAAGAGACGCTTGAAAAGAGAACGTCCTGATGATAGTAGACCTGTGAACCCATCACAGTCACCTCGATATGATCAACAATTTCATACAAAAAACCCTAAATCATATGATACAAGTAGGCTTCCTCCGGGGTGGTTAGATTGTCCTGCATTTGGCCAGGAGATTTGCTGCATGATACCTTCTAAGGTTCCTCTTGGTGAATCATTCAATGACTGCATTTTGCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAGCAGAGAGTTTTAAATAGAAAACTTGGTCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCAGTAACAGATTTAAAAAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAGGGGGCGTGATTCTGTACCTGAAAATTCATCTGTGAATCAATTCGTCTACGAGGTTATACAATTTTTGTCACGCCAAAAGCAATCAAAGAAGTATATACTTGTTCATTGTACACATGGGCATAATCGTACGGGATACATGATTATCCATTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAGGCAATTAAAATTTTTTCCGAAGCACGCCCTCCAGGAATCTATAAACCCGATTATATTGATGCATTGTACACATTTTATCATGAGAAAAAGCCGGAGATGGTAGTTTGTCCTCCTACTCCGGAGTGGAAAAGATCTTCTGAATTTGATCTCAATGGTGAAGCAGTTCCAGACGATGATGATGATGGATTACCGGGTCCTGATTTGCAAGAGAACCAGGAGACAGGCGCTCAGATGACGAATGATGATGTTTTAGGAGATGAGATACCCGCTGATCAGCAAGATGCATTTCGACAGTTCTGTTATCAAACACTTAGATTGGGTGTTGGGGCCAGAGGACATGCACAATTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAGTTATTACGACAACGTTATTATTATGCAACATGGAAGGCTGATGGTACACGGTATATGATGCTAATAACAATGGATGGGTGTTACTTGATTGATAGAAGTTTTAATTGTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTACAAATGAGGGTTTGGGCGAGAAGACCCACCATTTCACATTACTTGATGGCGAGATGGTTATTGATACCCTGCCAGATTCACATAAGCAGGAGAGAAGATACCTTATATATGATCTAATGGCAATCAACCACGTTTCAGTAATAGAGCGACCCTTCTGTGAAAGATGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATTATGAACGCCAACATATTTACCAGAGCAGAAATCCTTACTACAGATATGATCTGGAACCGTTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTTTCTACTGTCCAAAAGCTTTTAAGGGAATTCATTAAAAGACTCTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTATGTACCACGTACTCACGAAGGACTCTTAAAGTGGAAATACGCCAATTTAAACTCAGTTGACTTTCTGTTTGAGGTTGAAGGTGAAAGGGAGCTACTTTTTGTGAATGAGCGGGGAAAGAAGAAACTTATGGATGGGAATAAGGTTGCCTTCAAAGATGGTTCAGATCCGTCACTTTATTCCGGAAAGATCATCGAGTGTACTTGGGATTTTGATAATCTGGAATGGATATTCTTGCGAATTAGGACAGATAAATCAACTCCAAACGAGTTTAATACTTACAGAAAGGTGATGCGAAGCATAAAAGACAACATCACAGAGGAAGACTTGTTGAATGAAATAAATGAGATAATCCGCCTTCCCATGTATGCGGACAGGATAAAAACTGATAGTAAAGCAACTCAGCATGCTAATGCTGCAAAGCGAAGGTGA 2055 0.4083 MIVAMDLNASPVPEEDDDVFEERARVPDYIPPEDRIESGAEIARREREERKRRLKRERPDDSRPVNPSQSPRYDQQFHTKNPKSYDTSRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCILPGKRYSFKQVIHQQRVLNRKLGLVIDLTNTSRYYPVTDLKKEGIKHVKIQCRGRDSVPENSSVNQFVYEVIQFLSRQKQSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGLPGPDLQENQETGAQMTNDDVLGDEIPADQQDAFRQFCYQTLRLGVGARGHAQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNCRRVQMRFPCRSTNEGLGEKTHHFTLLDGEMVIDTLPDSHKQERRYLIYDLMAINHVSVIERPFCERWKMLEKEVIEPRNYERQHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVQKLLREFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEVEGERELLFVNERGKKKLMDGNKVAFKDGSDPSLYSGKIIECTWDFDNLEWIFLRIRTDKSTPNEFNTYRKVMRSIKDNITEEDLLNEINEIIRLPMYADRIKTDSKATQHANAAKRR* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0701 684 Gene3D Protein tyrosine phosphatase superfamily 86 298 IPR029021 -
Tpr4g0701 684 PIRSF mRNA_capping_HCE 76 684 IPR017074 GO:0004484|GO:0006370|GO:0140818
Tpr4g0701 684 ProSitePatterns Tyrosine specific protein phosphatases active site. 209 219 IPR016130 GO:0016311|GO:0016791
Tpr4g0701 684 SUPERFAMILY Nucleic acid-binding proteins 557 669 IPR012340 -
Tpr4g0701 684 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 187 256 IPR000387 GO:0016311|GO:0016791
Tpr4g0701 684 MobiDBLite consensus disorder prediction 18 63 - -
Tpr4g0701 684 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 317 555 - -
Tpr4g0701 684 MobiDBLite consensus disorder prediction 1 87 - -
Tpr4g0701 684 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 684 - -
Tpr4g0701 684 Gene3D - 553 661 IPR012340 -
Tpr4g0701 684 MobiDBLite consensus disorder prediction 64 86 - -
Tpr4g0701 684 ProSiteProfiles ATP-dependent DNA ligase family profile. 447 610 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr4g0701 684 ProSiteProfiles Dual specificity protein phosphatase domain profile. 112 268 IPR020422 GO:0006470|GO:0008138
Tpr4g0701 684 Pfam Dual specificity phosphatase, catalytic domain 137 262 IPR000340 GO:0008138|GO:0016311
Tpr4g0701 684 PANTHER MRNA-CAPPING ENZYME 3 684 - -
Tpr4g0701 684 CDD Adenylation_mRNA_capping 344 555 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tpr4g0701 684 CDD RNA_5'-triphosphatase 93 259 - -
Tpr4g0701 684 Pfam mRNA capping enzyme, C-terminal domain 559 652 IPR013846 -
Tpr4g0701 684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 279 IPR029021 -
Tpr4g0701 684 SMART dsp_5 113 264 IPR020422 GO:0006470|GO:0008138
Tpr4g0701 684 Pfam mRNA capping enzyme, catalytic domain 356 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Tpr4g0701 684 Gene3D DNA ligase/mRNA capping enzyme 315 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0701 Tpr-Chr4 6449924 6463392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0701 1 676 Protein tyrosine phosphatase (PTP) family AT3G09100 68.328 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0701 K13917 - gmx:100776633 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g0701 4 6449924 6463392 Tpr4g0701 4 6449924 6463392 ECH