LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g0668	ATGGCATATCTGTCTTCCGGAGCTTCTCAAATAATACATGCTAGAATTTCAAAGTACCAGTTGAACTTGAGGACTACTGCAGGAGTTAAGAAGAATGAAATGGTCAATAAAATTGTTGCGAAGGGAAAATACAGTCATTCTGGAAGTAATGGAATTGTTGCTAAAACATCTAACATGGAAATGCGGCCAATATGGTACTCTGGTATAAATCATAGAATTTCAAAGCACCAGTTAAAACTTTGGACTATTGCAGCAGTTAAGAAGGACAAAATGGTCAATAAAATTGTCGAAGAGTTTAAGGGTGAAGGAGAAAAGCCACTGTCAACCAATGCTCCACGATCAAAGTATGATGTTTTTGTAAACTTTAGGGGAAAGGATATCCGCAAAGGCTTTCTTAGCCATTTGATTAAGGCTTTTCCTCGAAAGCAAATAAGCTTCTTTGTAGACAACAAAATTAAGAGGGGAGATGAGTTATCACATTCACTTGTTGAAGCAATTGAAGGATCATTCATTTCATTGATCATATTCTCAGAAAACTACGCTTCTTCACATTGGTGCTTAGATGAGCTTGTGAAAATATTTGAGTGCAAAAAGAAATATGGACAGATTGTAATACCTGTTTTCTACAACGTAGAAACTACAGTTGTTAAGAGTCAAAAGGAGAGTTATGAAAAAGCATTTTCTGAGCATAACGAAAAGTATAGTCCGTCAAGGGTGCAGAACTGGAAACATGCTTTGCAAAAATCTACTAAACTGACAGGAATTAAGTTATCAGATTTTCAGAATGAAGCTGAGCTGCTTGAAGAAATCATCAATGTTGTGTCGAAGAGTTTGAGTAAGCACCCAGTTAACTCAAAAGGACTTGTTGGAATTGACAAACCAATTGAACATTTGGAATCATTGTTACGGAAAGGGTCAAAAAAGGTCCGTGTCATTGGAATTTGTGGTATGGGTGGTATTGGCAAGACAACTATTGCAGAAGAAATATTTTGCCGAAATCGGTCTAAATATGATGGTGGTTGTTTTTTACCAAAGGTAAGTGAAGAGTTAACAAGACATGGATTGCAATCTTTAAAAGAAAACCTTTTTTCTACATTACTAGAAGAAGATGTGAAAATTGATCCACTAAAAAGGTTGGCTAGTGATATTGTGAGACGGGTTGGCCGCATGAAGGTTCTTATTGTTCTTGATGATGTCAAGAATAAAAATCAGGTAAAGATGTTATTTGGAACCCTTGATTGGTTTCGATCAGATAGTAGAATAATTATAACAACCAAAGATAAGCAAGTACTTATTGCTAATGGAGTTGATGATCATGATCTATATGAGGTTGGGGTATTGAGTTTTAATCAAGCACTTGAGCTTTTCTATTTAAATGCCTTCAAACAGATTAATCAACCTGAAAACGAGAAGTACTATAAGCTATCAAAGAGGTTTGTCGATTATGCTGGATGCATTCCGTTAGTTCTTGAAATTTTGGGTAGTCATCTTATTGGAAAAGATATGGAATTTTGGGAAAGTCAGTTAGACCAACTTAAAACAAATCCAATTAAAGAAGTTTATGATGTAATGATTCTCAGTTATAAAGATCTTGATCGCTTAGAGCGAAAGATTTTTTTAGATATTGCATGTTTTTTCAATGGCTTGAAATTGAAAGTGGATTACATAAAACTTTTACTGAAAGATTGTGAGAGTGATCGTTCAGTGACTGTTGGGTTAGAAAGGTTGAAAGATAAAGCTCTTGTAACTATTTCTGAAGATAATGTTGTTTCTATGCATGACACCATACAAGAAATGGCCCGAGAAGTTGTTCGTCGAGCATCTAGTAAAGACCCTAGAAAACGCAGTCGATTATGGGATCAAGATGAAATTTGTGATGTATTGAAAAATGAAAAGGGTACTGAAGCAGTTAGAAGCATAAGTTTAGACTTGTCAGCAATTAAGAAGCTGGAATTAAGCCCTCGTGTATTTGCTAAGATGACCAACCTGCAATTTTTGGATTTTCATGGTAGACACGATCAAGACTGTTTGGATCTTCTTCCTCAAGGGCTTCAATCTTTTCCAAGTGATCTAAGATATCTTCATTGGATGCATTACCCTCTAAAATCATTCCCTGAGAAGTTTTCTGCTAAGAATCTTGTTATATTAGACTTGTCATATAGCCGTGTGGAAGAGCTTTGGTATGGAATTAAGAGTCTGGTTAATTTAAAAGAAGTTATACTCTATAGATCCAAAGTACTAAAGGAGCTACCAGACTTTTCAAAAGCTCCACATCTTGAAGTATTGGATATCAGTCGTTGTTATAATTTGAAAAGCATCCATCCAACTATTTTCTCTCTTGAAAACCTAGTCAGATTGAATCTAGAATTTTGTTCTTCCCTTACCAAATTCGAAAGTGATACTCGTTTAAGCTCCCTCCGTTGTCTCAACCTTGGATATTGCAAAAAACTGAGGACATTCTCGGTGACAACAAATAGTTTGATAGAATTGGACCTAACTGGCATTCGCATCAATGCACTTCCATCATCTTTTGGATGTCTAAGCAAGCTAGAAATGCTGGCCTTAGGAGAGAGTAAAATTGAGAGCATACCTTCAAGCATAAAAAATCTTACAAGACTACGTAAACTAGACCTGAGACTTTGCTCTGAGGTTCTGGCTTTACCAGCGCTTCCTTCATCACTTGAAACTCTAATTGCTGAAGGTGAATCGCTGAAGACTGTATTGTTCCCTTCAACAGCTTCTGAACAATTCAAGGAAAACAAGAAAGGGGTTGAGTTCTGGAATTGCTCGAACTTGGATAAGCGTTCTCTCATAAATATTGGGTTGAATGTTCAAATCAATATAGTGAAGTTTGCATATCAACATTTATCCACACTGGAACATGATGATTATGTCGAAAGCTATGATGATTACAAATATGAATCTCCTTATCAAGCTGTGTATGTGTATCCTGGAAGTAGTGTTCCAAAGTGGTTGTCGTACAAGACAACAAAGGATGAAATGATTGTTGATATCTCTCCGCCACATTTCTCCCCTTTATTAGGCTTTGTTTTTTGCTTCATTCTTGCTGAGGACTCCCAATATTGTGATCTTATGGAATTTAACATCACTGTATTTGATGGTGAGGGCGATGGTGAAAAGGATGATATCGATATCTACATGTATAGGACATGTTGCTATACTGCATTAGATCATGTGTGCATGATATACGACCAACCATGTTCTCAGTACCTAACCAGCATAGCGAAAAATCAGACAAAGTTTAAAATCAAGGTTACAGCAAGGACAGTATCCAATAAATATAGGGAAGGACCAGAGGTGAAGCTAAAAGGGTTTGGCATCAGCCCGGTAAATCAAGCAATATATCAAAATCTCATTCACGAAATGGAATTGTTTGATTATATTAACATATGGAAGAGGACTGTGCTTAGTATCATCCTGTGTATTTTCTTCCTGCAGCTGAAGATTAAGATGAAGAAGTTGATTTACACACAAATCTATAGTCTAATTGGTTGCAGCATTTCCAAATCTGAGGTAGCTAAAGAAGTGTACGATAAGGGGATTGCAGAAGTACAGGTTGAAAATGAAGCTATAGGACAAGTACTTCAGAAGTAA	3615	0.3629	MAYLSSGASQIIHARISKYQLNLRTTAGVKKNEMVNKIVAKGKYSHSGSNGIVAKTSNMEMRPIWYSGINHRISKHQLKLWTIAAVKKDKMVNKIVEEFKGEGEKPLSTNAPRSKYDVFVNFRGKDIRKGFLSHLIKAFPRKQISFFVDNKIKRGDELSHSLVEAIEGSFISLIIFSENYASSHWCLDELVKIFECKKKYGQIVIPVFYNVETTVVKSQKESYEKAFSEHNEKYSPSRVQNWKHALQKSTKLTGIKLSDFQNEAELLEEIINVVSKSLSKHPVNSKGLVGIDKPIEHLESLLRKGSKKVRVIGICGMGGIGKTTIAEEIFCRNRSKYDGGCFLPKVSEELTRHGLQSLKENLFSTLLEEDVKIDPLKRLASDIVRRVGRMKVLIVLDDVKNKNQVKMLFGTLDWFRSDSRIIITTKDKQVLIANGVDDHDLYEVGVLSFNQALELFYLNAFKQINQPENEKYYKLSKRFVDYAGCIPLVLEILGSHLIGKDMEFWESQLDQLKTNPIKEVYDVMILSYKDLDRLERKIFLDIACFFNGLKLKVDYIKLLLKDCESDRSVTVGLERLKDKALVTISEDNVVSMHDTIQEMAREVVRRASSKDPRKRSRLWDQDEICDVLKNEKGTEAVRSISLDLSAIKKLELSPRVFAKMTNLQFLDFHGRHDQDCLDLLPQGLQSFPSDLRYLHWMHYPLKSFPEKFSAKNLVILDLSYSRVEELWYGIKSLVNLKEVILYRSKVLKELPDFSKAPHLEVLDISRCYNLKSIHPTIFSLENLVRLNLEFCSSLTKFESDTRLSSLRCLNLGYCKKLRTFSVTTNSLIELDLTGIRINALPSSFGCLSKLEMLALGESKIESIPSSIKNLTRLRKLDLRLCSEVLALPALPSSLETLIAEGESLKTVLFPSTASEQFKENKKGVEFWNCSNLDKRSLINIGLNVQINIVKFAYQHLSTLEHDDYVESYDDYKYESPYQAVYVYPGSSVPKWLSYKTTKDEMIVDISPPHFSPLLGFVFCFILAEDSQYCDLMEFNITVFDGEGDGEKDDIDIYMYRTCCYTALDHVCMIYDQPCSQYLTSIAKNQTKFKIKVTARTVSNKYREGPEVKLKGFGISPVNQAIYQNLIHEMELFDYINIWKRTVLSIILCIFFLQLKIKMKKLIYTQIYSLIGCSISKSEVAKEVYDKGIAEVQVENEAIGQVLQK*	1205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g0668	1204	SUPERFAMILY	L domain-like	639	960	-	-
	Tpr4g0668	1204	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	111	1134	-	-
	Tpr4g0668	1204	Gene3D	-	113	276	IPR035897	-
	Tpr4g0668	1204	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	280	542	IPR027417	-
	Tpr4g0668	1204	SMART	till_3	115	252	IPR000157	GO:0007165
	Tpr4g0668	1204	SUPERFAMILY	"Winged helix" DNA-binding domain	519	629	IPR036390	-
	Tpr4g0668	1204	ProSiteProfiles	TIR domain profile.	114	278	IPR000157	GO:0007165
	Tpr4g0668	1204	Pfam	NB-ARC domain	298	520	IPR002182	GO:0043531
	Tpr4g0668	1204	Gene3D	-	447	532	IPR042197	-
	Tpr4g0668	1204	Gene3D	-	277	437	IPR027417	-
	Tpr4g0668	1204	PRINTS	Disease resistance protein signature	311	326	-	-
	Tpr4g0668	1204	PRINTS	Disease resistance protein signature	386	400	-	-
	Tpr4g0668	1204	PRINTS	Disease resistance protein signature	483	497	-	-
	Tpr4g0668	1204	PRINTS	Disease resistance protein signature	868	884	-	-
	Tpr4g0668	1204	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	111	1134	IPR044974	GO:0006952
	Tpr4g0668	1204	Pfam	TIR domain	115	282	IPR000157	GO:0007165
	Tpr4g0668	1204	Gene3D	Ribonuclease Inhibitor	825	961	IPR032675	-
	Tpr4g0668	1204	Gene3D	Ribonuclease Inhibitor	578	824	IPR032675	-
	Tpr4g0668	1204	SUPERFAMILY	Toll/Interleukin receptor TIR domain	111	254	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g0668	Tpr-Chr4	6154982	6169638	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g0668	116	888	WRKY Transcription Factor Family	AT4G12020	34.478	2.03e-101	353

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g0668	-		-	aprc:113850949	1266.91